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* gnu: Move emacs for building from inputs to native-inputs.Alex Kost2016-05-24
| | | | | | | | | | * gnu/packages/emacs.scm (geiser): Move "emacs" from inputs to native-inputs. (paredit): Likewise. (haskell-mode): Likewise. (emacs-w3m): Likewise. (emacs-wget): Likewise. * gnu/packages/mail.scm (mu): Likewise. * gnu/packages/version-control.scm (vc-dwim): Likewise.
* build-system/emacs: Use 'emacs-minimal' by default.Alex Kost2016-05-24
| | | | | * guix/build-system/emacs.scm (default-emacs): Use 'emacs-minimal'. * gnu/packages/emacs.scm (emacs-auctex): Use 'emacs'.
* gnu: Add emacs-minimal.Alex Kost2016-05-24
| | | | * gnu/packages/emacs.scm (emacs-minimal): New variable.
* gnu: emacs: Remove *.elc and autoloads from the tarball.Alex Kost2016-05-24
| | | | | * gnu/packages/emacs.scm (emacs)[source]: Add 'snippet' to remove compiled and generated elisp files.
* gnu: enblend-enfuse: Update to 4.2.Efraim Flashner2016-05-24
| | | | | * gnu/packages/photo.scm (enblend-enfuse): Update to 4.2. [native-inputs]: Add help2man, texlive-minimal.
* gnu: grub: Re-enable test.Leo Famulari2016-05-23
| | | | * gnu/packages/grub.scm (grub)[arguments]: Re-enable test.
* graph: Add 'node-reachable-count'.Ludovic Courtès2016-05-24
| | | | | * guix/graph.scm (node-reachable-count): New procedure. * tests/graph.scm ("node-reachable-count"): New test.
* graph: Expose 'traverse/depth-first'.Ludovic Courtès2016-05-24
| | | | | | * guix/graph.scm (traverse/depth-first): New procedure, based on code formerly in 'node-transitive-edges'. (node-transitive-edges): Rewrite in terms of it.
* refresh: Make 'list-dependents' a monadic procedure.Ludovic Courtès2016-05-24
| | | | | | * guix/scripts/refresh.scm (list-dependents): Remove use of 'with-store' and 'run-with-store'. (guix-refresh): Wrap body in with-store/run-with-store.
* gnu: vdirsyncer: Update to 0.11.0.Leo Famulari2016-05-23
| | | | * gnu/packages/dav.scm (vdirsyncer): Update to 0.11.0.
* gnu: git: Update to 2.8.3.Leo Famulari2016-05-23
| | | | | * gnu/packages/version-control.scm (git): Update to 2.8.3. (git-manpages)[source]: Update hash.
* gnu: Add r-zoo.Roel Janssen2016-05-23
| | | | | | * gnu/packages/statistics.scm (r-zoo): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: borg: Update to 1.0.3.Leo Famulari2016-05-23
| | | | | * gnu/packages/backup.scm (borg): Update to 1.0.3. [source]: Remove pypi-uri.
* union: Compare inode numbers in 'file=?'.Ludovic Courtès2016-05-23
| | | | * guix/build/union.scm (file=?): Compare the inode of ST1 and ST2.
* cve: Remove now unnecessary HTTP caching.Ludovic Courtès2016-05-23
| | | | | * guix/cve.scm (call-with-cve-port): Use 'http-fetch' instead of 'http-fetch/cached'.
* cve: Keep a summarized sexp in cache instead of the full XML.Ludovic Courtès2016-05-23
| | | | | | | | This avoids ~20s of XML parsing when running 'guix lint -c cve'. * guix/cve.scm (vulnerability->sexp, sexp->vulnerability) (fetch-vulnerabilities): New procedures. (current-vulnerabilities): Use 'fetch-vulnerabilities'.
* gnu: Add poppler-qt5.Roel Janssen2016-05-23
| | | | | | * gnu/packages/pdf.scm (poppler-qt5): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add slurm-drmaa.Ricardo Wurmus2016-05-23
| | | | * gnu/packages/parallel.scm (slurm-drmaa): New variable.
* gnu: Add ParDRe.Ricardo Wurmus2016-05-23
| | | | * gnu/packages/bioinformatics.scm (pardre): New variable.
* gnu: gnu-pw-mgr: Update to 2.0.Efraim Flashner2016-05-22
| | | | * gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.0.
* gnu: imagemagick: Update to 6.9.4-4.Leo Famulari2016-05-22
| | | | * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-4.
* gnu: Add python2-rope.Lukas Gradl2016-05-22
| | | | * gnu/packages/python.scm (python2-rope): New variable.
* gnu: Add gnome-calendar.Kei Yamashita2016-05-21
| | | | | | * gnu/packages/gnome.scm (gnome-calendar): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add envstore.Matthew Jordan2016-05-21
| | | | | | * gnu/package/shellutils.scm: New file. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add sicp.Jan Nieuwenhuizen2016-05-21
| | | | | | * gnu/packages/scheme.scm (sicp): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add dia.Roel Janssen2016-05-21
| | | | | | * gnu/packages/gnome.scm (dia): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* build: Fix 'AM_V_at' typo.Mathieu Lirzin2016-05-21
| | | | * Makefile.am (hydra-jobs.scm): Fix 'AM_V_at' typo.
* grafts: Rename files whose name matches a graft.Ludovic Courtès2016-05-21
| | | | | | | | | Fixes <http://bugs.gnu.org/23132>. Reported by Mark H Weaver <mhw@netris.org>. * guix/build/graft.scm (rename-matching-files): New procedure. (rewrite-directory): Use it. * tests/grafts.scm ("graft-derivation, renaming"): New test.
* grafts: Preserve empty directories when grafting.Ludovic Courtès2016-05-21
| | | | | | * guix/build/graft.scm (rewrite-directory)[rewrite-leaf]: Add case for 'directory. Pass #:directories? #t to 'find-files'.
* substitute: Gracefully handle invalid store file names.Ludovic Courtès2016-05-21
| | | | | | | | | | | Before, something like: echo have /gnu/foo | ./test-env guix substitute --query would lead to an ugly backtrace. * guix/scripts/substitute.scm (narinfo-cache-file): Call 'leave' when 'store-hash-part' returns #f.
* graph: Allow store file names for 'derivation' and 'references' graphs.Ludovic Courtès2016-05-21
| | | | | | | | | | | | | | * guix/scripts/graph.scm (%derivation-node-type)[convert]: Add 'derivation-path?' and catch-all clauses. (%reference-node-type)[convert]: Add 'store-path?' and catch-all clauses. (assert-package, nodes-from-package): New procedures. (%package-node-type, %bag-node-type,%bag-with-origins-node-type) (%bag-emerged-node-type): Add 'convert' field (guix-graph): Rename 'packages' to 'items' and allow 'store-path?' arguments. * guix/graph.scm (<node-type>)[convert]: Adjust comment. * doc/guix.texi (Invoking guix graph): Document it.
* derivations: 'derivation' sorts items in the resulting object.Ludovic Courtès2016-05-21
| | | | | | | | | | | | * guix/derivations.scm (derivation-input<?): New procedure. (write-derivation)[coalesce-duplicate-inputs]: Remove. Remove calls to 'sort'. (coalesce-duplicate-inputs): New procedure. (derivation-hash): Sort INPUTS and use 'coalesce-duplicate-inputs'. (derivation)[input->derivation-input] [coalesce-duplicate-inputs]: New procedures. Sort OUTPUTS, INPUTS, and ENV-VARS. * tests/derivations.scm ("read-derivation vs. derivation"): New test.
* graph: Use absolute file name canonicalization.Ludovic Courtès2016-05-21
| | | | * guix/scripts/graph.scm (guix-graph): Wrap in 'with-fluids'.
* gnu: linux-libre: Update to 4.5.5.Mark H Weaver2016-05-20
| | | | * gnu/packages/linux.scm (linux-libre): Update to 4.5.5.
* gnu: linux-libre-4.4: Update to 4.4.11.Mark H Weaver2016-05-20
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.11.
* ant-build-system: Add unpack phase.Ricardo Wurmus2016-05-20
| | | | | * guix/build/ant-build-system.scm (unpack): New procedure. (%standard-phases): Use it.
* gnu: Add default gcc-objc++.Ricardo Wurmus2016-05-20
| | | | * gnu/packages/gcc.scm (gcc-objc++): New variable.
* gnu: Add gcc-objc++-4.9.Ricardo Wurmus2016-05-20
| | | | * gnu/packages/gcc.scm (gcc-objc++-4.9): New variable.
* gnu: Add default gcc-objc.Ricardo Wurmus2016-05-20
| | | | * gnu/packages/gcc.scm (gcc-objc): New variable.
* gnu: Add gcc-objc-4.9.Ricardo Wurmus2016-05-20
| | | | * gnu/packages/gcc.scm (gcc-objc-4.9): New variable.
* gnu: r-rcpparmadillo: Update to 0.6.700.6.0.Ricardo Wurmus2016-05-20
| | | | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0. * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 6.700.6.
* gnu: armadillo: Update to 6.700.7.Ricardo Wurmus2016-05-20
| | | | * gnu/packages/maths.scm (armadillo): Update to 6.700.7.
* gnu: r-genomation: Update to 1.4.2.Ricardo Wurmus2016-05-20
| | | | * gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2.
* gnu: r-jsonlite: Update to 0.9.20.Ricardo Wurmus2016-05-20
| | | | * gnu/packages/web.scm (r-jsonlite): Update to 0.9.20.
* gnu: r-plotly: Update to 3.6.0.Ricardo Wurmus2016-05-20
| | | | * gnu/packages/statistics.scm (r-plotly): Update to 3.6.0.
* gnu: r-matrixstats: Update to 0.50.2.Ricardo Wurmus2016-05-20
| | | | * gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2.
* gnu: r-r-rsp: Update to 0.30.0.Ricardo Wurmus2016-05-20
| | | | * gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0.
* gnu: r-rmarkdown: Update to 0.9.6.Ricardo Wurmus2016-05-20
| | | | * gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6.
* gnu: r-plotrix: Update to 3.6-2.Ricardo Wurmus2016-05-20
| | | | * gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2.
* gnu: r-devtools: Update to 1.11.1.Ricardo Wurmus2016-05-20
| | | | * gnu/packages/statistics.scm (r-devtools): Update to 1.11.1.
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