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* gnu: linux-libre: Update to 4.15.14.Mark H Weaver2018-03-30
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.14. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.31.Mark H Weaver2018-03-30
| | | | | * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.31. (%linux-libre-4.14-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.91.Mark H Weaver2018-03-30
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.91.
* gnu: linux-libre@4.4: Update to 4.4.125.Mark H Weaver2018-03-30
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.125.
* gnu: linux-libre@4.1: Update to 4.1.51.Mark H Weaver2018-03-30
| | | | * gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.51.
* gnu: Update php to 7.2.4.Julien Lepiller2018-03-30
| | | | * gnu/packages/php.scm (php): Update to 7.2.4.
* gnu: Define ao.Ricardo Wurmus2018-03-30
| | | | | | This is a follow-up to commit 28f4d56dd311a3b4c7102394120de05be6937494. * gnu/packages/engineering.scm (ao): Restore variable definition.
* gnu: ao: Update to 0-2.9d857d1.Ricardo Wurmus2018-03-30
| | | | | | | | | * gnu/packages/engineering.scm (ao): Rename... (libfive): ...to this new variable; update to 0-2.9d857d1. [inputs]: Remove glfw, libepoxy, glm, guile-2.0; add qtbase, guile-2.2. [home-page]: Use new libfive home page. [description]: Adjust. (ao): Redefine using 'deprecated-package'.
* gnu: emacs-org: Change source and naming scheme.Nicolas Goaziou2018-03-30
| | | | | * gnu/packages/emacs.scm (emacs-org): Switch back to ELPA. Adopt its naming scheme.
* gnu: emacs-org-contrib: Fix build.Nicolas Goaziou2018-03-30
| | | | | | * gnu/packages/emacs.scm (emacs-org-contrib): Update SHA256. [version]: Add keyword. [arguments]: Use new keyword.
* gnu: Add delly.Roel Janssen2018-03-30
| | | | | | | | * gnu/packages/bioinformatics.scm (delly): New variable. * gnu/packages/patches/delly-use-system-libraries.patch: New file. * gnu/local.mk: Include delly-use-system-libraries.patch. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add r-regioner.Roel Janssen2018-03-30
| | | | | | * gnu/packages/bioconductor.scm (r-regioner): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: rust: Update rust to 1.24.1.Nikolai Merinov2018-03-30
| | | | | | | | | | | | | | | | | | * gnu/packages/rust.scm (rust-bootstrap): Freeze bootstrap version to 1.22.1. Reorganize bootstrap binaries to match new "rust" package structure with two ouputs "out" with Rust compiler and "cargo" with Cargo package manager. Replace all "system*" by "invoke". (rust-1.23): Rename "rustc" to "rust". Update sha256 for tarball. Add cargo related dependencies. Install "cargo" as separate "rust" output. Remove substitutes for parts that were fixed in "rustc" source code. Install documentation to separate "doc" output. Update configuration according to changes in "rustc" source code. Replace all "system*" by "invoke". (rust): Create package for 1.24.1 rust release based on rust-1.23 release. * guix/build-system/cargo.scm (default-rust): Replace "default-cargo" and "default-rustc" functions with "default-rust" function. (cargo-build-system): Take only one package as "rust" source. Use "rustc" of default output of "rust" package, use "cargo" as "cargo" output of "rust" package.
* gnu: ruby-2.2: Update to 2.2.10.Ben Woodcroft2018-03-30
| | | | * gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.10.
* gnu: ruby-2.3: Update to 2.3.7.Ben Woodcroft2018-03-30
| | | | * gnu/packages/ruby.scm (ruby-2.3): Update to 2.3.7.
* gnu: mash: Update to 2.0.Ben Woodcroft2018-03-30
| | | | * gnu/packages/bioinformatics.scm (mash): Update to 2.0.
* gnu: mafft: Update to 7.394.Ben Woodcroft2018-03-30
| | | | * gnu/packages/bioinformatics.scm (mafft): Update to 7.394.
* gnu: diamond: Update to 0.9.19.Ben Woodcroft2018-03-30
| | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.9.19.
* gnu: pybitmessage: Update to 0.6.3.2 [security fixes].Ricardo Wurmus2018-03-29
| | | | | * gnu/packages/messaging.scm (pybitmessage): Update to 0.6.3.2. [source]: Fetch from git.
* gnu: hydrogen: Update to 1.0.0-beta1.Ricardo Wurmus2018-03-29
| | | | | | | * gnu/packages/music.scm (hydrogen): Update to 1.0.0-beta1. [source]: Fetch from git. [arguments]: Add phase to fix installation directory for pixmaps. [inputs]: Remove qt-4; add qtbase and qtxmlpatterns.
* gnu: mod-host: Update to 0.10.6-3.1726ad06b.Ricardo Wurmus2018-03-29
| | | | * gnu/packages/music.scm (mod-host): Update to 0.10.6-3.1726ad06b.
* gnu: drumkv1: Update to 0.9.0.Ricardo Wurmus2018-03-29
| | | | * gnu/packages/music.scm (drumkv1): Update to 0.9.0.
* gnu: samplv1: Update to 0.9.0.Ricardo Wurmus2018-03-29
| | | | * gnu/packages/music.scm (samplv1): Update to 0.9.0.
* gnu: padthv1: Update to 0.9.0.Ricardo Wurmus2018-03-29
| | | | * gnu/packages/music.scm (padthv1): Update to 0.9.0.
* gnu: synthv1: Update to 0.9.0.Ricardo Wurmus2018-03-29
| | | | * gnu/packages/music.scm (synthv1): Update to 0.9.0.
* gnu: qtractor: Update to 0.9.0.Ricardo Wurmus2018-03-29
| | | | * gnu/packages/music.scm (qtractor): Update to 0.9.0.
* gnu: awesome: Remove obsolete snippet.Marius Bakke2018-03-29
| | | | * gnu/packages/wm.scm (awesome)[source](snippet): Remove.
* gnu: xcb-util-xrm: Update to 1.3.Marius Bakke2018-03-29
| | | | * gnu/packages/xdisorg.scm (xcb-util-xrm): Update to 1.3.
* gnu: mbedtls-apache: Update to 2.7.2.Marius Bakke2018-03-29
| | | | | * gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.2. [source](snippet): Remove.
* gnu: Add botan.Leo Famulari2018-03-29
| | | | * gnu/packages/crypto.scm (botan): New variable.
* gnu: Add fpm2.Tonton2018-03-29
| | | | | | | * gnu/packages/password-utils.scm (fpm2): New variable. Signed-off-by: Tonton <tonton@riseup.net> Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add screen-message.Tonton2018-03-29
| | | | | | | * gnu/packages/xdisorg.scm (screen-message): New variable. Signed-off-by: Tonton <tonton@riseup.net> Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: r-lme4: Update to 1.1-16.Tobias Geerinckx-Rice2018-03-29
| | | | * gnu/packages/statistics.scm (r-lme4): Update to 1.1-16.
* gnu: r-curl: Update to 3.2.Tobias Geerinckx-Rice2018-03-29
| | | | * gnu/packages/web.scm (r-curl): Update to 3.2.
* gnu: bspwm: Update to 0.9.4.Tobias Geerinckx-Rice2018-03-29
| | | | * gnu/packages/wm.scm (bspwm): Update to 0.9.4.
* gnu: rss-bridge: Update to 2018-03-11.Tobias Geerinckx-Rice2018-03-29
| | | | * gnu/packages/web.scm (rss-bridge): Update to 2018-03-11.
* gnu: r-mutationalpatterns: Update to 1.4.3.Roel Janssen2018-03-29
| | | | | * gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.3; [propagated-inputs]: Remove r-gridextra.
* gnu: kaiju: Update to 1.6.2.Roel Janssen2018-03-29
| | | | | * gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.2; [inputs]: Add zlib.
* gnu: Add duperemove.Vasile Dumitrascu2018-03-29
| | | | | | * gnu/packages/disk.scm (duperemove): New variable. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
* gnu: Add python-debug.Ludovic Courtès2018-03-29
| | | | | | Suggested by Pjotr Prins <pjotr.public12@thebird.nl>. * gnu/packages/python.scm (python-debug): New variable.
* gnu: nano: Update to 2.9.5.Efraim Flashner2018-03-29
| | | | * gnu/packages/nano.scm (nano): Update to 2.9.5.
* gnu: Add r-idr.Roel Janssen2018-03-29
| | | | * gnu/packages/cran.scm (r-idr): New variable.
* gnu: Add r-amap.Roel Janssen2018-03-29
| | | | * gnu/packages/cran.scm (r-amap): New variable.
* gnu: Add r-venndiagram.Roel Janssen2018-03-29
| | | | * gnu/packages/cran.scm (r-venndiagram): New variable.
* gnu: Add r-pastecs.Roel Janssen2018-03-29
| | | | * gnu/packages/cran.scm (r-pastecs): New variable.
* gnu: libusb4java: Adjust for building with libusb 1.0.22.Ricardo Wurmus2018-03-29
| | | | | * gnu/packages/libusb.scm (libusb4java)[arguments]: Add phase to remove "-Werror" flag.
* gnu: libusb-for-axoloti: Update patch.Ricardo Wurmus2018-03-29
| | | | | * gnu/packages/patches/libusb-for-axoloti.patch: Update context for libusb 1.0.22.
* gnu: Refactor boot-service-type and activation-service-type.Chris Marusich2018-03-29
| | | | | | | | * gnu/services.scm (boot-service-type) <compose>: Use the "identity" procedure instead of the "append" procedure because it more accurately reflects the intent, which is to simply return the single list of extensions to which fold-services applies the "compose" procedure. (activation-service-type) <compose>: Likewise.
* doc: Improve <service-type> documentation.Chris Marusich2018-03-29
| | | | | * doc/guix.texi (Service Reference): Correct and clarify some statements regarding the "compose" and "extend" procedures of <service-type>.
* guix-install.sh: Explicitly set root's home directory.Chris Marusich2018-03-29
| | | | | | | | | | | * etc/guix-install.sh (ROOT_HOME): New variable. (sys_create_store, sys_enable_guix_daemon, sys_authorize_build_farms): Use ROOT_HOME instead of ~root or the HOME environment variable. * doc/guix.texi (Binary Installation): Instead of assuming that ~ and $HOME refer to root's directory simply because commands are being run as root, explicilty refer to it via ~root. Fixes: <https://bugs.gnu.org/30728>
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