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* gnu: Add python-grequests.Ricardo Wurmus2018-09-24
| | | | * gnu/packages/python-web.scm (python-grequests): New variable.
* gnu: m17n-lib: Update to 1.8.0.Arun Isaac2018-09-24
| | | | * gnu/packages/emacs.scm (m17n-lib): Update to 1.8.0.
* gnu: m17n-db: Update to 1.8.0.Arun Isaac2018-09-24
| | | | * gnu/packages/emacs.scm (m17n-db): Update to 1.8.0.
* gnu: Add r-bseqsc.Ricardo Wurmus2018-09-24
| | | | * gnu/packages/bioinformatics.scm (r-bseqsc): New variable.
* gnu: Add r-cssam.Ricardo Wurmus2018-09-24
| | | | * gnu/packages/bioinformatics.scm (r-cssam): New variable.
* gnu: Add r-xbioc.Ricardo Wurmus2018-09-24
| | | | * gnu/packages/bioinformatics.scm (r-xbioc): New variable.
* gnu: Prefix all Emacs packages with "emacs-".Pierre Neidhardt2018-09-24
| | | | | | * gnu/packages/emacs.scm: Prefix all Emacs packages with "emacs-". This is to enforce consistency and so that `emacs-packages?' can reliably detect Emacs packages based on the "emacs-" prefix.
* gnu: python-networkx: Use HTTPS home page.Tobias Geerinckx-Rice2018-09-24
| | | | * gnu/packages/python.scm (python-networkx)[home-page]: Use HTTPS.
* gnu: python-networkx: Update to 2.2.Tobias Geerinckx-Rice2018-09-24
| | | | * gnu/packages/python.scm (python-networkx): Update to 2.2.
* gnu: python-decorator: Update to 4.3.0.Tobias Geerinckx-Rice2018-09-24
| | | | | * gnu/packages/python.scm (python-decorator): Update to 4.3.0. [arguments]: Run the test suite.
* gnu: python-marshmallow: Update to 3.0.0b14.Tobias Geerinckx-Rice2018-09-24
| | | | * gnu/packages/python.scm (python-marshmallow): Update to 3.0.0b14.
* gnu: libiptcdata: Update to 1.0.5.Tobias Geerinckx-Rice2018-09-24
| | | | | * gnu/packages/image.scm (libiptcdata): Update to 1.0.5. [home-page]: Follow Debian's maintained upstream.
* gnu: virtualgl: Update to 2.6.Tobias Geerinckx-Rice2018-09-24
| | | | | * gnu/packages/gl.scm (virtualgl): Update to 2.6. [inputs]: Add libxtst.
* gnu: parallel: Update to 20180922.Tobias Geerinckx-Rice2018-09-24
| | | | * gnu/packages/parallel.scm (parallel): Update to 20180922.
* gnu: workrave: Use Guix's built-in bootstrap phase.Tobias Geerinckx-Rice2018-09-24
| | | | | * gnu/packages/gnome.scm (workrave)[arguments]: Remove 'autoconf' phase.
* gnu: python-gitdb: Update to 2.0.4.Tobias Geerinckx-Rice2018-09-24
| | | | | * gnu/packages/version-control.scm (python-gitdb): Update to 2.0.4. [arguments]: Replace AND with equivalent but more 'accurate' BEGIN.
* gnu: nano: Update to 3.1.Tobias Geerinckx-Rice2018-09-24
| | | | * gnu/packages/nano.scm (nano): Update to 3.1.
* gnu: fping: Use HTTPS home page.Tobias Geerinckx-Rice2018-09-24
| | | | * gnu/packages/networking.scm (fping)[home-page]: Use HTTPS.
* gnu: fping: Update to 4.1.Tobias Geerinckx-Rice2018-09-24
| | | | * gnu/packages/networking.scm (fping): Update to 4.1.
* vm: Use "cache=loose" for all 9p mounts.Ludovic Courtès2018-09-23
| | | | | | | | This significantly improves read throughput when running things like "guix hash -r ...". * gnu/system/vm.scm (%linux-vm-file-systems): Add 'flags' for "store". Add "cache=loose" to every file system.
* vm: Disable deduplication for 'guix system vm-image'.Ludovic Courtès2018-09-23
| | | | | * gnu/system/vm.scm (qemu-image): Pass #:deduplicate? #f to 'root-partition-initializer'.
* database: Register each store item only once.Ludovic Courtès2018-09-23
| | | | | | | | | Fixes <https://bugs.gnu.org/32600>. Reported by Leo Famulari. * guix/store/database.scm (register-items): Check whether TO-REGISTER is in DB by calling 'path-id', and skip the reset-timestamps, registration, and deduplication phases when it is.
* database: 'register-items' shows a progress bar.Ludovic Courtès2018-09-23
| | | | | | * guix/store/database.scm (register-items): Add #:log-port. Use 'progress-reporter/bar' to show a progress report. (register-path): Pass #:log-port to 'register-items'.
* store-copy: Display a progress bar when copying store items.Ludovic Courtès2018-09-23
| | | | | * guix/build/store-copy.scm (populate-store): Add #:log-port parameter. Use 'progress-reporter/bar' to report progress.
* serialization: Remove redundancy in 'write-file'.Ludovic Courtès2018-09-23
| | | | * guix/serialization.scm (write-file): Remove redundant 'member' call.
* system: Mention '--skip-checks' in initrd diagnostics.Ludovic Courtès2018-09-23
| | | | | * gnu/system/mapped-devices.scm (check-device-initrd-modules): Add note about '--skip-checks'.
* gnu: Add emacs-synosaurus.Pierre Neidhardt2018-09-23
| | | | * gnu/packages/emacs.scm (emacs-synosaurus): New variable.
* gnu: xpra: Update to 2.3.4.Rutger Helling2018-09-23
| | | | * gnu/packages/xorg.scm (xpra): Update to 2.3.4.
* gnu: eolie: Use webkitgtk-2.22.Mark H Weaver2018-09-23
| | | | | | | * gnu/packages/gnome.scm (eolie)[native-inputs]: Add gcc-7:lib. [inputs]: Replace webkitgtk with webkitgtk-2.22. [arguments]: Add "gcc:lib" to the list of libraries to add to LD_LIBRARY_PATH. Use invoke.
* gnu: epiphany: Use webkitgtk-2.22.Mark H Weaver2018-09-23
| | | | | * gnu/packages/gnome.scm (epiphany)[native-inputs]: Add gcc-7. [inputs]: Replace webkitgtk with webkitgtk-2.22.
* gnu: webkitgtk: Add version 2.22.2.Mark H Weaver2018-09-23
| | | | * gnu/packages/webkit.scm (webkitgtk-2.22): New variable.
* gnu: Add Go 1.11.Katherine Cox-Buday2018-09-22
| | | | | | * gnu/packages/golang.scm (go-1.11): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: icecat: Add fixes from upstream mozilla-esr60 [security fixes].Mark H Weaver2018-09-22
| | | | | | | | | | | | Includes fixes for CVE-2018-12383 and CVE-2018-12385. * gnu/packages/patches/icecat-CVE-2018-12383.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/patches/icecat-avoid-bundled-libraries.patch: Adapt to apply cleanly to IceCat 60. * gnu/packages/gnuzilla.scm (mozilla-patch): Update to fetch from mozilla-esr60. (icecat): Add selected changesets from upstream mozilla-esr60.
* Revert 'gnu: rust: Remove unused "ar" setting.'.Danny Milosavljevic2018-09-22
| | | | | | | Some versions of Rust do need it and others complain about it. For now, revert the removal entirely. This reverts commit ec944a1de97c8a523d6e1089b8c4430424297f93.
* gnu: hmmer: Update to 3.2.1.Ben Woodcroft2018-09-22
| | | | | | | | | * gnu/packages/bioinformatics.scm (hmmer): Update to 3.2.1. [origin]: Remove patch. [license]: Change to BSD-3. [supported-systems]: New field. * gnu/packages/patches/hmmer-remove-cpu-specificity.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: snap: Update to 4.2.1.4.Nicolas Goaziou2018-09-21
| | | | * gnu/packages/education.scm (snap): Update to 4.2.1.4.
* gnu: emacs-org: Update to 9.1.14.Nicolas Goaziou2018-09-21
| | | | * gnu/packages/emacs.scm (emacs-org): Update to 9.1.14.
* gnu: workrave: Update to 1.10.21.Tobias Geerinckx-Rice2018-09-21
| | | | | * gnu/packages/gnome.scm (workrave): Update to 1.10.21. [source]: Use GIT-FILE-NAME.
* gnu: emacs-password-store: Update to 1.7.3.Tobias Geerinckx-Rice2018-09-21
| | | | * gnu/packages/emacs.scm (emacs-password-store): Update to 1.7.3.
* gnu: filezilla: Update to 3.37.1.Tobias Geerinckx-Rice2018-09-21
| | | | * gnu/packages/ftp.scm (filezilla): Update to 3.37.1.
* gnu: wxwidgets: Update to 3.0.4.Tobias Geerinckx-Rice2018-09-21
| | | | * gnu/packages/wxwidgets.scm (wxwidgets): Update to 3.0.4.
* gnu: python-pyparsing: Update to 2.2.1.Tobias Geerinckx-Rice2018-09-21
| | | | | * gnu/packages/python.scm (python-pyparsing): Update to 2.2.1. [source]: Use PYPI-URI.
* gnu: rust: Remove unused "ar" setting.Danny Milosavljevic2018-09-21
| | | | | * gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Remove unused "ar" setting.
* doc: Add section about inferiors.Ludovic Courtès2018-09-21
| | | | | * doc/guix.texi (Inferiors): New node. (Channels): Add xref to "Inferiors".
* inferior: Add 'inferior-for-channels'.Ludovic Courtès2018-09-21
| | | | | * guix/inferior.scm (%inferior-cache-directory): New variable. (inferior-for-channels): New procedure.
* channels: Add 'channel-instances->derivation'.Ludovic Courtès2018-09-21
| | | | | | * guix/channels.scm (channel-instances->derivation): New procedure. (latest-channel-derivation): Use it. (channel-instance-derivations): Make private.
* profiles: 'packages->manifest' now accepts inferior packages.Ludovic Courtès2018-09-21
| | | | | | | | | * guix/profiles.scm (packages->manifest)[inferiors-loaded?]: New variable. [inferior->entry]: New procedure. Accept inferior packages when INFERIORS-LOADED? is true. * tests/guix-package.sh: Add test using a manifest with an inferior. * tests/inferior.scm ("packages->manifest"): New test.
* inferior: Add 'inferior-package->manifest-entry'.Ludovic Courtès2018-09-21
| | | | | | * guix/inferior.scm (inferior-package->manifest-entry): New procedure. * tests/inferior.scm (manifest-entry->list): New procedure. ("inferior-package->manifest-entry"): New test.
* inferior: Add 'inferior-package-search-paths' & co.Ludovic Courtès2018-09-21
| | | | | | | | * guix/inferior.scm (%inferior-package-search-paths) (inferior-package-native-search-paths) (inferior-package-search-paths) (inferior-package-transitive-native-search-paths): New procedures. * tests/inferior.scm ("inferior-package-search-paths"): New test.
* inferior: Add 'inferior-package-inputs' & co.Ludovic Courtès2018-09-21
| | | | | | | | | | | * guix/inferior.scm (open-inferior): Use (ice-9 match). (inferior-package-input-field, inferior-package-inputs): (inferior-package-native-inputs) (inferior-package-propagated-inputs) (inferior-package-transitive-propagated-inputs): New procedures. * tests/inferior.scm ("inferior-package-inputs"): New test. inputs fixlet
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