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* gnu: Add bamtools.Ricardo Wurmus2015-04-21
| | | | * gnu/packages/bioinformatics.scm (bamtools): New variable.
* gnu: Add subread.Ricardo Wurmus2015-04-21
| | | | * gnu/packages/bioinformatics.scm (subread): New variable.
* ui: Add 'symlink' replacement with better error reporting.Ludovic Courtès2015-04-20
| | | | * guix/ui.scm (symlink): New procedure.
* system: Make /gnu/store a read-only bind mount by default.Ludovic Courtès2015-04-20
| | | | | | * gnu/system/file-systems.scm (%immutable-store): New variable. (%base-file-systems): Add it. * doc/guix.texi (File Systems): Document it.
* file-systems: Use a second 'mount' call for read-only bind mounts.Ludovic Courtès2015-04-20
| | | | | | | * gnu/build/file-systems.scm (MS_REMOUNT): New constant. (mount-file-system): Add 'flags' local variable. When FLAGS has MS_BIND & MS_RDONLY, call 'mount' with MS_REMOUNT. * gnu/services/base.scm (file-system-service) <start>: Likewise.
* gnu: Remove all #:select from (gnu packages ...) modules.Ludovic Courtès2015-04-20
| | | | | | | | | | | | | This works around Guile bug <http://bugs.gnu.org/15540>. Reported by Andreas Enge <andreas@enge.fr>. * gnu/packages/engineering.scm: Don't #:select from (gnu packages ...). * gnu/packages/gcc.scm: Likewise. * gnu/packages/package-management.scm: Likewise. * gnu/packages/photo.scm: Likewise. * gnu/packages/pulseaudio.scm: Likewise. * gnu/packages/moe.scm: Likewise, and #:select from (guix licenses) instead.
* gexp: Add printers for <gexp-input> and <gexp-output>.Ludovic Courtès2015-04-20
| | | | | * guix/gexp.scm (write-gexp-input, write-gexp-output): New procedures. (<gexp-input>, <gexp-output>): Use them as printers.
* profiles: Create a CA certificate bundle only when it would be non-empty.Ludovic Courtès2015-04-20
| | | | | * guix/profiles.scm (ca-certificate-bundle): Create $output/etc/ssl/certs if and only if CA-FILES is non-empty.
* gnu: Add sra-tools.Ricardo Wurmus2015-04-20
| | | | * gnu/packages/bioinformatics.scm (sra-tools): New variable.
* gnu: Add NCBI VDB.Ricardo Wurmus2015-04-20
| | | | * gnu/packages/bioinformatics.scm (ncbi-vdb): New variable.
* gnu: Add NGS Java bindings.Ricardo Wurmus2015-04-20
| | | | * gnu/packages/bioinformatics.scm (ngs-java): New variable.
* gnu: Add NGS SDK.Ricardo Wurmus2015-04-20
| | | | * gnu/packages/bioinformatics.scm (ngs-sdk): New variable.
* gnu: Add Biopython.Ricardo Wurmus2015-04-20
| | | | | * gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New variables.
* gnu: Adjust latest perl modules to new 'modify-phases' syntax.Eric Bavier2015-04-19
| | | | | | | * gnu/packages/compression.scm (perl-compress-raw-zlib)[arguments]: Add missing quotes, as needed since commit f8503e2. * gnu/packages/perl.scm (perl-ipc-run)[arguments]: Likewise. * gnu/packages/xml.scm (perl-xml-sax)[arguments]: Likewise.
* gnu: Add WebKitGTK+.宋文武2015-04-20
| | | | | * gnu/packages/webkit.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu: Add JSON-Any.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-json-any): New variable.
* import: cpan: Fix license string for Artistic license.Eric Bavier2015-04-19
| | | | | * guix/import/cpan.scm (string->license): Remove extraneous "_0" suffix for Artistics licenses.
* gnu: nix: Propagate perl inputs.Eric Bavier2015-04-19
| | | | | | * gnu/packages/package-management.scm (nix)[inputs]: Move perl-www-curl, perl-dbi, perl-dbd-sqlite to... [propagated-inputs]: ...this new field
* gnu: Add Sys-Hostname-Long.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-sys-hostname-long): New variable.
* gnu: Add Text-Table.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-text-table): New variable.
* gnu: Add Text-Aligner.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-text-aligner): New variable.
* gnu: Add Set-Scalar.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-set-scalar): New variable.
* gnu: Add SQL-SplitStatement.Eric Bavier2015-04-19
| | | | * gnu/packages/databases.scm (perl-sql-splitstatement): New variable.
* gnu: Add SQL-Tokenizer.Eric Bavier2015-04-19
| | | | * gnu/packages/databases.scm (perl-sql-tokenizer): New variable.
* gnu: Add Perl Readonly.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-readonly): New variable.
* gnu: Add Perl Net-Amazon-S3.Eric Bavier2015-04-19
| | | | | | * gnu/packages/patches/perl-net-amazon-s3-moose-warning.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/web.scm (perl-net-amazon-s3): New variable.
* gnu: Add XML-LibXML.Eric Bavier2015-04-19
| | | | * gnu/packages/xml.scm (perl-xml-libxml): New variable.
* gnu: Add XML-SAX;Eric Bavier2015-04-19
| | | | * gnu/packages/xml.scm (perl-xml-sax): New variable.
* gnu: Add XML-SAX-Base.Eric Bavier2015-04-19
| | | | * gnu/packages/xml.scm (perl-xml-sax-base): New variable.
* gnu: Add XML-NamespaceSupport.Eric Bavier2015-04-19
| | | | * gnu/packages/xml.scm (perl-xml-namespacesupport): New variable.
* gnu: Add Term-ProgressBar-Simple.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-term-progressbar-simple): New variable.
* gnu: Add Term-ProgressBar-Quiet.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-term-progressbar-quiet): New variable.
* gnu: Add Test-MockObject.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-test-mockobject): New variable.
* gnu: Add UNIVERSAL-isa.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-universal-isa): New variable.
* gnu: Add UNIVERSAL-can.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-universal-can): New variable.
* gnu: Add Term-ProgressBar.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-term-progressbar): New variable.
* gnu: Add TermReadKey.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-term-readkey): New variable.
* gnu: Add Class-MethodMaker.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-class-methodmaker): New variable.
* gnu: Add IO-Interactive.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-io-interactive): New variable.
* gnu: Add Term-Encoding.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-term-encoding): New variable.
* gnu: Add MooseX-Types-DateTime-MoreCoercions.Eric Bavier2015-04-19
| | | | | * gnu/packages/perl.scm (perl-moosex-types-datetime-morecoercions): New variable.
* gnu: Add Time-Duration-Parse.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-time-duration-parse): New variable.
* gnu: Add Time-Duration.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-time-duration): New variable.
* gnu: Add Test-Pod-Coverage.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-test-pod-coverage): New variable.
* gnu: Add Pod-Coverage.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-pod-coverage): New variable.
* gnu: Add Devel-Symdump.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-devel-symdump): New variable.
* gnu: Add MooseX-Types-DateTime.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-moosex-types-datetime): New variable.
* gnu: Add DateTimeX-Easy.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-datetimex-easy): New variable.
* gnu: Add DateTime-Format-Natural.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-datetime-format-natural): New variable.
* gnu: Add Module-Util.Eric Bavier2015-04-19
| | | | * gnu/packages/perl.scm (perl-module-util): New variable.
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