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* gnu: Add ghc-listlike.John Soo2019-09-02
| | | | | | * gnu/packages/haskell-xyz.scm (ghc-listlike): New variable. Signed-off-by: Timothy Sample <samplet@ngyro.com>
* gnu: Add ghc-storable-record.John Soo2019-09-02
| | | | | | * gnu/packages/haskell-xyz.scm (ghc-storable-record): New variable. Signed-off-by: Timothy Sample <samplet@ngyro.com>
* gnu: Add ghc-fmlist.John Soo2019-09-02
| | | | | | * gnu/packages/haskell-xyz.scm (ghc-fmlist): New variable. Signed-off-by: Timothy Sample <samplet@ngyro.com>
* gnu: Add ghc-storablevector.John Soo2019-09-02
| | | | | | * gnu/packages/haskell-xyz.scm (ghc-storablevector): New variable. Signed-off-by: Timothy Sample <samplet@ngyro.com>
* gnu: Add ghc-timeit.John Soo2019-09-02
| | | | | | * gnu/packages/haskell-xyz.scm (ghc-timeit): New variable. Signed-off-by: Timothy Sample <samplet@ngyro.com>
* gnu: Add ghc-non-negative.John Soo2019-09-02
| | | | | | * gnu/packages/haskell-xyz.scm (ghc-non-negative): New variable. Signed-off-by: Timothy Sample <samplet@ngyro.com>
* gnu: Add ghc-unsafe.John Soo2019-09-02
| | | | | | * gnu/packages/haskell-xyz.scm (ghc-unsafe): New variable. Signed-off-by: Timothy Sample <samplet@ngyro.com>
* gnu: icecat: Update to 60.9.0-guix1.Mark H Weaver2019-09-02
| | | | | * gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.9.0-guix1. (icecat-source)[upstream-firefox-source]: Update hash.
* gnu: grammalecte: Update to 1.3.0.Nicolas Goaziou2019-09-02
| | | | * gnu/packages/dictionaries.scm (grammalecte): Update to 1.3.0.
* gnu: snap: Update to 5.1.0.Nicolas Goaziou2019-09-02
| | | | * gnu/packages/education.scm (snap): Update to 5.1.0.
* gnu: rclone: Update to 1.49.1.Nicolas Goaziou2019-09-02
| | | | | | * gnu/packages/sync.scm (rclone): Update to 1.49.1. [source]: Update uri. [arguments]: Update #:import-path.
* gnu: gcl: Enable tests.Kei Kebreau2019-09-02
| | | | | * gnu/packages/lisp.scm (gcl)[arguments]: Remove #:tests? flag and set the #:test-target to "ansi-tests/test_results".
* gnu: Add cl-hooks.Pierre Neidhardt2019-09-02
| | | | * gnu/packages/lisp.scm (cl-hooks, ecl-cl-hooks, sbcl-cl-hooks): New variables.
* gnu: sbcl-fiveam: Update to 1.4.1.Pierre Neidhardt2019-09-02
| | | | * gnu/packages/lisp.scm (sbcl-fiveam): Update to 1.4.1.
* gnu: Add net.didierverna.asdf-flv.Pierre Neidhardt2019-09-02
| | | | | * gnu/packages/lisp.scm (cl-net.didierverna.asdf-flv, ecl-net.didierverna.asdf-flv, sbcl-net.didierverna.asdf-flv): New variables.
* lint: Add 'archival' checker.Ludovic Courtès2019-09-02
| | | | | | | | | | | * guix/lint.scm (check-archival): New procedure. (%network-dependent-checkers): Add 'archival' checker. * tests/lint.scm ("archival: missing content") ("archival: content available") ("archival: missing revision") ("archival: revision available") ("archival: rate limit reached"): New tests. * doc/guix.texi (Invoking guix lint): Document it.
* swh: Make 'commit-id?' public.Ludovic Courtès2019-09-02
| | | | * guix/swh.scm (commit-id?): Make public.
* swh: Add hooks for rate limiting handling.Ludovic Courtès2019-09-02
| | | | | | | | | | | * guix/swh.scm (%allow-request?, %save-rate-limit-reset-time) (%general-rate-limit-reset-time): New variables. (request-rate-limit-reached?, update-rate-limit-reset-time!): New procedures. (call): Call '%allow-request?'. Change 'swh-error' protocol to pass METHOD in addition to URL. * tests/swh.scm ("rate limit reached") ("%allow-request? and request-rate-limit-reached?"): New tests.
* tests: 'with-http-server' accepts multiple responses.Ludovic Courtès2019-09-02
| | | | | | | | | | | | | | | | | | | | | | | | | * guix/tests/http.scm (call-with-http-server): Replace 'code' and 'data' parameters with 'responses+data'. Compute RESPONSES as a function of that. Remove #:headers parameter. [http-write]: Quit only when RESPONSES is empty. [server-body]: Get the response and data from RESPONSES, and set it to point to the rest. (with-http-server): Adjust accordingly. * tests/derivations.scm ("'download' built-in builder") ("'download' built-in builder, invalid hash") ("'download' built-in builder, not found") ("'download' built-in builder, check mode"): Adjust to new 'with-http-server' interface. * tests/lint.scm ("home-page: 200") ("home-page: 200 but short length") ("home-page: 404", "home-page: 301, invalid"): ("home-page: 301 -> 200", "home-page: 301 -> 404") ("source: 200", "source: 200 but short length") ("source: 404", "source: 404 and 200") ("source: 301 -> 200", "source: 301 -> 404"): ("github-url", github-url): Likewise. * tests/swh.scm (with-json-result) ("lookup-origin, not found"): Likewise.
* doc: Explain that "guix import" and "guix refresh" may need GnuPG.Ludovic Courtès2019-09-02
| | | | | | | | Fixes <https://bugs.gnu.org/36051>. Reported by Jesse Gibbons <jgibbons2357@gmail.com>. * doc/guix.texi (Invoking guix import, Invoking guix refresh): Mention that GnuPG must be installed.
* gnu: Add rust-heapsize-plugin, rust-language-tags.Efraim Flashner2019-09-02
| | | | | * gnu/packages/crates-io.scm (rust-heapsize-plugin, rust-language-tags): New variables.
* gnu: Add rust-heapsize-0.3.Efraim Flashner2019-09-02
| | | | * gnu/packages/crates-io.scm (rust-heapsize-0.3): New variable.
* gnu: Add rust-owning-ref.Efraim Flashner2019-09-02
| | | | * gnu/packages/crates-io.scm (rust-owning-ref): New variable.
* gnu: Add rust-scoped-threadpool.Efraim Flashner2019-09-02
| | | | * gnu/packages/crates-io.scm (rust-scoped-threadpool): New variable.
* gnu: Add rust-redox-syscall, rust-thread-id.Efraim Flashner2019-09-02
| | | | | * gnu/packages/crates-io.scm (rust-redox-syscall, rust-thread-id): New variables.
* import: cran: Only use the git import with what looks like a URL.Ricardo Wurmus2019-09-02
| | | | | * guix/import/cran.scm (fetch-description): Abort if the argument does not look like a URL.
* import: cran: Retry failed git imports on Bioconductor.Ricardo Wurmus2019-09-02
| | | | | * guix/import/cran.scm (cran->guix-package): Retry failed git imports on Bioconductor.
* gnu: r-ldblock: Update to 1.14.2.Ricardo Wurmus2019-09-02
| | | | | | * gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.14.2. [propagated-inputs]: Remove r-erma; add r-ensdb-hsapiens-v75, r-ensembldb, and r-httr.
* gnu: r-mixomics: Update to 6.8.2.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.2.
* gnu: r-fgsea: Update to 1.10.1.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/bioconductor.scm (r-fgsea): Update to 1.10.1.
* gnu: r-seurat: Update to 3.1.0.Ricardo Wurmus2019-09-02
| | | | | * gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.0. [propagated-inputs]: Add r-leiden, r-rcppannoy, and r-uwot.
* gnu: r-rtracklayer: Update to 1.44.3.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.3.
* gnu: r-biomart: Update to 2.40.4.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.4.
* gnu: r-annotationdbi: Update to 1.46.1.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.46.1.
* gnu: r-iranges: Update to 2.18.2.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.2.
* gnu: r-pbapply: Update to 1.4-2.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/statistics.scm (r-pbapply): Update to 1.4-2.
* gnu: r-rmarkdown: Update to 1.15.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/statistics.scm (r-rmarkdown): Update to 1.15.
* gnu: r-hms: Update to 0.5.1.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/statistics.scm (r-hms): Update to 0.5.1.
* gnu: r-whisker: Update to 0.4.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/statistics.scm (r-whisker): Update to 0.4.
* gnu: r-chron: Update to 2.3-54.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/statistics.scm (r-chron): Update to 2.3-54.
* gnu: Add r-leiden.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/cran.scm (r-leiden): New variable.
* gnu: r-umap: Update to 0.2.3.1.Ricardo Wurmus2019-09-02
| | | | | * gnu/packages/cran.scm (r-umap): Update to 0.2.3.1. [propagated-inputs]: Add r-openssl.
* gnu: r-enrichr: Update to 2.1.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/cran.scm (r-enrichr): Update to 2.1.
* gnu: r-dalex: Update to 0.4.7.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/cran.scm (r-dalex): Update to 0.4.7.
* gnu: r-ggforce: Update to 0.3.1.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/cran.scm (r-ggforce): Update to 0.3.1.
* gnu: r-bookdown: Update to 0.13.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/cran.scm (r-bookdown): Update to 0.13.
* gnu: r-tdthap: Update to 1.1-11.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/cran.scm (r-tdthap): Update to 1.1-11.
* gnu: r-units: Update to 0.6-4.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/cran.scm (r-units): Update to 0.6-4.
* gnu: r-wgaim: Update to 2.0-0.Ricardo Wurmus2019-09-02
| | | | | * gnu/packages/cran.scm (r-wgaim): Update to 2.0-0. [propagated-inputs]: Remove r-lattice; add r-ggplot2.
* gnu: r-apcluster: Update to 1.4.8.Ricardo Wurmus2019-09-02
| | | | * gnu/packages/cran.scm (r-apcluster): Update to 1.4.8.
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