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* gnu: webkitgtk: Update to 2.18.4 [fixes CVE-2017-{7156,13856,13866,13870}].Leo Famulari2017-12-19
| | | | * gnu/packages/webkit.scm (webkitgtk): Update to 2.18.4.
* gnu: r-htmltable: Update to 1.11.0.Ricardo Wurmus2017-12-19
| | | | | * gnu/packages/web.scm (r-htmltable): Update to 1.11.0. [propagated-inputs]: Add r-dplyr, r-htmltools, r-rstudioapi, and r-tidyr.
* gnu: r-testthat: Update to 2.0.0.Ricardo Wurmus2017-12-19
| | | | | * gnu/packages/statistics.scm (r-testthat): Update to 2.0.0. [propagated-inputs]: Add r-cli, r-rlang, and r-withr.
* gnu: Add r-cli.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/cran.scm (r-cli): New variable.
* gnu: r-hardyweinberg: Update to 1.5.9.Ricardo Wurmus2017-12-19
| | | | | * gnu/packages/cran.scm (r-hardyweinberg): Update to 1.5.9. [propagated-inputs]: Add r-rsolnp.
* gnu: Add r-rsolnp.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/cran.scm (r-rsolnp): New variable.
* gnu: Add r-truncnorm.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/cran.scm (r-truncnorm): New variable.
* gnu: r-curl: Update to 3.1.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/web.scm (r-curl): Update to 3.1.
* gnu: r-ade4: Update to 1.7-10.Ricardo Wurmus2017-12-19
| | | | | * gnu/packages/statistics.scm (r-ade4): Update to 1.7-10. [propagated-inputs]: Add r-mass.
* gnu: r-registry: Update to 0.5.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-registry): Update to 0.5.
* gnu: r-iterators: Update to 1.0.9.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-iterators): Update to 1.0.9.
* gnu: r-segmented: Update to 0.5-3.0.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-segmented): Update to 0.5-3.0.
* gnu: r-rprojroot: Update to 1.3-1.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-1.
* gnu: r-rcpparmadillo: Update to 0.8.300.1.0.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.300.1.0.
* gnu: r-plotrix: Update to 3.7.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-plotrix): Update to 3.7.
* gnu: r-git2r: Update to 0.20.0.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-git2r): Update to 0.20.0.
* gnu: r-backports: Update to 1.1.2.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-backports): Update to 1.1.2.
* gnu: r-yaml: Update to 2.1.16.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-yaml): Update to 2.1.16.
* gnu: r-reshape2: Update to 1.4.3.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-reshape2): Update to 1.4.3.
* gnu: r-digest: Update to 0.6.13.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-digest): Update to 0.6.13.
* gnu: r-vcd: Update to 1.4-4.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/cran.scm (r-vcd): Update to 1.4-4.
* gnu: r-proxy: Update to 0.4-20.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/cran.scm (r-proxy): Update to 0.4-20.
* gnu: r-biomart: Update to 2.34.1.Ricardo Wurmus2017-12-19
| | | | | * gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.1. [propagated-inputs]: Add r-httr.
* gnu: r-gviz: Update to 1.22.2.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.2.
* gnu: r-gqtlstats: Update to 1.10.1.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.10.1.
* gnu: r-rtracklayer: Update to 1.38.2.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.2.
* gnu: r-limma: Update to 3.34.4.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.4.
* gnu: r-edger: Update to 3.20.2.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.2.
* gnu: r-biocstyle: Update to 2.6.1.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.1.
* gnu: r-dexseq: Update to 1.24.2.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.2.
* gnu: r-vegan: Update to 2.4-5.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-5.
* upstream: Reject bogus archive type guesses.Ludovic Courtès2017-12-19
| | | | | | | | This would crash 'guix refresh -u' with source URLs ending in "…/v1.2.3". * guix/upstream.scm (package-update): Be stricter when determining ARCHIVE-TYPE.
* gnu: xfce4-session: Disable (duplicate) Gtk+ icon cache generation.Danny Milosavljevic2017-12-19
| | | | | * gnu/packages/xfce.scm (xfce4-session)[arguments]: Add make-flags to disable Gtk+ icon cache generation.
* services: urandom-seed: Try using a HWRNG to seed the Linux CRNG at boot.Leo Famulari2017-12-19
| | | | | | * gnu/services/base.scm (urandom-seed-shepherd-service): Try to read from '/dev/hwrng' at boot, as a supplement to any saved random seed. * doc/guix.texi (Base Services): Document the new feature.
* gnu: wxmaxima: Update to 17.10.1.Kei Kebreau2017-12-19
| | | | * gnu/packages/maths.scm (wxmaxima): Update to 17.10.1.
* gnu: Add quakespasm.nee2017-12-19
| | | | | | * gnu/packages/games.scm (quakespasm): New variable. Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
* gnu: gajim: Update to 0.16.9.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/messaging.scm (gajim): Update to 0.16.9.
* gnu: python-nbxmpp: Update to 0.6.1.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.1.
* gnu: dino: Update to 0.0-3.f25fadde2.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/messaging.scm (dino): Update to 0.0-3.f25fadde2.
* gnu: pcsc-lite: Update to 1.8.23.Ricardo Wurmus2017-12-19
| | | | | * gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23. [arguments]: Disable libsystemd check.
* gnu: antiword: Fix broken embedded directory name.Ricardo Wurmus2017-12-19
| | | | | | * gnu/packages/textutils.scm (antiword)[arguments]: Replace "configure" phase to substitute reference to "/usr/share/antiword" with the actual directory in the store.
* gnu: Update gwl to 0.1.1.Roel Janssen2017-12-19
| | | | * gnu/packages/package-management.scm (gwl): Update to 0.1.1.
* gnu: emulation-station: Add missing file-name field.Efraim Flashner2017-12-19
| | | | | * gnu/packages/games.scm (emulation-station)[source]: Add missing file-name field.
* gnu: Update r-cowplot to 0.9.2.Roel Janssen2017-12-19
| | | | * gnu/packages/statistics.scm (r-cowplot): Update to 0.9.2.
* tests: Adjust php-fpm test to new nginx API.Ludovic Courtès2017-12-19
| | | | | | | | | | Fixes <https://bugs.gnu.org/29769>. Reported by Mark H Weaver <mhw@netris.org>. This is a followup to 8b223ceac4ff0781e95d69362875f87cff03f4d6. * gnu/tests/web.scm (%php-fpm-nginx-server-blocks): Turn 'listen' into a list.
* gnu: mpd: Update to 0.20.13.Leo Famulari2017-12-19
| | | | * gnu/packages/mpd.scm (mpd): Update to 0.20.13.
* gnu: keepassxc: Update to 2.2.4.Leo Famulari2017-12-19
| | | | * gnu/packages/password-utils.scm (keepassxc): Update to 2.2.4.
* gnu: GnuPG pinentry: Update to 1.1.0.Leo Famulari2017-12-18
| | | | | * gnu/packages/gnupg.scm (pinentry-tty, pinentry-gtk2, pinentry-gnome3, pinentry-qt): Update to 1.1.0.
* gnu: linux-libre: Update to 4.14.7.Mark H Weaver2017-12-18
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.7. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.70.Mark H Weaver2017-12-18
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.70.
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