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* gnu: mes: Oops, use mirror://gnu download url.Jan Nieuwenhuizen2018-09-11
| | | | * gnu/packages/mes.scm (mes): Oops, use mirror://gnu download url.
* gnu: snakemake: Update home page.Tobias Geerinckx-Rice2018-09-11
| | | | * gnu/packages/python.scm (snakemake)[home-page]: Update.
* gnu: snakemake: Update to 5.2.2.Tobias Geerinckx-Rice2018-09-11
| | | | * gnu/packages/python.scm (snakemake): Update to 5.2.2.
* gnu: obnam: Add deprecation warning.Tobias Geerinckx-Rice2018-09-11
| | | | | * gnu/packages/backup.scm (obnam)[synopsis, description]: Note its retirement.
* gnu: unbound: Update to 1.8.0.Tobias Geerinckx-Rice2018-09-11
| | | | * gnu/packages/dns.scm (unbound): Update to 1.8.0.
* gnu: perl-dbd-mysql: Update to 4.047.Tobias Geerinckx-Rice2018-09-11
| | | | | * gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.047. [arguments]: Add 'skip-library-detection' phase.
* gnu: libreoffice: Update to 6.1.0.3.Jonathan Brielmaier2018-09-11
| | | | | | | | * gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.0.3. [source]: Correct indenting. [inputs]: Add libnumbertext and python-lxml. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add libnumbertext.Jonathan Brielmaier2018-09-11
| | | | | | * gnu/packages/libreoffice.scm (libnumbertext): New public variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: arpack-ng-openmpi: Fix build.Paul Garlick2018-09-11
| | | | | | | * gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Add 'set-test-environment phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-irony-mode.Tim Gesthuizen2018-09-11
| | | | | | | * gnu/packages/emacs.scm (emacs-irony-mode): New variable. (emacs-irony-mode-server): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: jupyter-guile-kernel: Add dependencies to the search path.Ludovic Courtès2018-09-11
| | | | | | | | | | | | | | This allows: guix environment --ad-hoc jupyter jupyter-guile-kernel \ -- jupyter notebook to work out-of-the-box. * gnu/packages/guile.scm (jupyter-guile-kernel)[arguments]: In 'install-kernel' phase, add '-L' and '-C' flags to 'kernel.json'. [propagated-inputs]: Remove. [inputs]: Add GUILE-JSON and GUILE-SIMPLE-ZMQ.
* gnu: guile-simple-zmq, jupyter-guile-kernel: Update to 5bb66a0 and a7db924.Ludovic Courtès2018-09-11
| | | | | * gnu/packages/guile.scm (guile-simple-zmq): Update to 5bb66a0. (jupyter-guile-kernel): Update to a7db924.
* gnu: Add r-svgui.Mădălin Ionel Patrașcu2018-09-11
| | | | | | * gnu/packages/cran.scm (r-svgui): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: spice: Update to 0.14.1 [fixes CVE-2018-10873].Marius Bakke2018-09-11
| | | | | | | | * gnu/packages/spice.scm (spice): Update to 0.14.1. [source](uri): Update to new "spice-server" subdirectory. [native-inputs]: Add GLIB-NETWORKING and GSETTINGS-DESKTOP-SCHEMAS. [arguments]: Remove configure-flag which is now off even when celt is available. Add phase to set $SSL_CERT_FILE.
* gnu: usbredir: Update to 0.8.0.Marius Bakke2018-09-11
| | | | | | | * gnu/packages/spice.scm (usbredir): Update to 0.8.0. [source]: Use URL-FETCH. [native-inputs]: Remove AUTOCONF, AUTOMAKE and LIBTOOL. [arguments]: Remove.
* gnu: syncthing: Update to 0.14.50.Leo Famulari2018-09-11
| | | | * gnu/packages/syncthing.scm (syncthing): Update to 0.14.50.
* gnu: go-github-com-syncthing-notify: Update to 0.0.0-2.b76b458.Leo Famulari2018-09-11
| | | | | * gnu/packages/syncthing.scm (go-github-com-syncthing-notify): Update to 0.0.0-2.b76b458.
* gnu: VLC: Update to 3.0.4.Leo Famulari2018-09-10
| | | | * gnu/packages/video.scm (vlc): Update to 3.0.4.
* gnu: git: Update to 2.19.0.Leo Famulari2018-09-10
| | | | | * gnu/packages/version-control.scm (git): Update to 2.19.0. (cgit)[inputs]: Use the source of Git 2.18.0.
* profiles: Correctly deal with etc/ being a relative symlink.Ludovic Courtès2018-09-11
| | | | | | | | | | | | Fixes <https://bugs.gnu.org/32686>. Reported by Oleg Pykhalov <go.wigust@gmail.com>. * guix/build/profiles.scm (ensure-writable-directory): Add #:symlink. [absolute?]: New procedure. [unsymlink]: Use it to determine how to resolve readlink's result. (build-profile): Pass SYMLINK to 'ensure-writable-directory'. * tests/profiles.scm ("profile-derivation when etc/ is a relative symlink"): New test.
* gnu: Add r-abd.pimi2018-09-11
| | | | | | * gnu/packages/cran.scm (r-abd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add r-mosaic.pimi2018-09-11
| | | | | | * gnu/packages/cran.scm (r-mosaic): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add r-mosaicdata.pimi2018-09-11
| | | | | | * gnu/packages/cran.scm (r-mosaicdata): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: guitarix: Update to 0.37.3.Ricardo Wurmus2018-09-10
| | | | | * gnu/packages/audio.scm (guitarix): Update to 0.37.3. [inputs]: Add curl.
* gnu: guitarix-lv2: Use correct configure flag.Thorsten Wilms2018-09-10
| | | | | | * gnu/packages/audio.scm (guitarix-lv2)[arguments]: Change configure flag. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: kakoune: Use HTTPS home page.Tobias Geerinckx-Rice2018-09-10
| | | | * gnu/packages/text-editors.scm (kakoune)[home-page]: Use HTTPS.
* gnu: mcrl2: Use HTTPS home page.Tobias Geerinckx-Rice2018-09-10
| | | | * gnu/packages/maths.scm (mcrl2)[home-page]: Use HTTPS.
* gnu: tor: Update to 0.3.4.8.Tobias Geerinckx-Rice2018-09-10
| | | | * gnu/packages/tor.scm (tor): Update to 0.3.4.8.
* gnu: kakoune: Update to 2018.09.04.Tobias Geerinckx-Rice2018-09-10
| | | | * gnu/packages/text-editors.scm (kakoune): Update to 2018.09.04.
* gnu: python-binaryornot: Update to 0.4.4.Tobias Geerinckx-Rice2018-09-10
| | | | * gnu/packages/python.scm (python-binaryornot): Update to 0.4.4.
* gnu: python-parse: Update to 1.8.4.Tobias Geerinckx-Rice2018-09-10
| | | | * gnu/packages/python.scm (python-parse): Update to 1.8.4.
* gnu: python-parse: Mark up description.Tobias Geerinckx-Rice2018-09-10
| | | | * gnu/packages/python.scm (python-parse)[description]: Use @code{}.
* gnu: python-jedi: Update to 0.12.1.Tobias Geerinckx-Rice2018-09-10
| | | | | * gnu/packages/python.scm (python-jedi): Update to 0.12.1. [synopsis, description]: Adjust to expanded functionality.
* gnu: python-parso: Update to 0.3.1.Tobias Geerinckx-Rice2018-09-10
| | | | * gnu/packages/python.scm (python-parso): Update to 0.3.1.
* gnu: qtractor: Update to 0.9.2.Tobias Geerinckx-Rice2018-09-10
| | | | | * gnu/packages/music.scm (qtractor): Update to 0.9.2. [arguments]: Remove obsolete Qt 5.11 workaround.
* Adjust all users of (gnu packages ldc) to use (gnu packages dlang).Leo Famulari2018-09-10
| | | | | | | This is a followup to commit 98d6543f86d01486c2f6e808eedd97c601ba3e7a. * gnu/packages/bioinformatics.scm, guix/build-system/dub.scm: Adjust accordingly.
* gnu: Add libabigail.Marius Bakke2018-09-10
| | | | * gnu/packages/elf.scm (libabigail): New public variable.
* gnu: python-debian: Update home page.Marius Bakke2018-09-10
| | | | | * gnu/packages/python.scm (python-debian)[home-page]: Set to source repository.
* gnu: python-libarchive-c: Update to 2.8.Marius Bakke2018-09-10
| | | | | | * gnu/packages/python.scm (python-libarchive-c): Update to 2.8. [arguments]: Replace 'check' phase. [native-inputs]: Add PYTHON-MOCK and PYTHON-PYTEST.
* gnu: python-tlsh: Update to 3.4.5.Marius Bakke2018-09-10
| | | | * gnu/packages/python.scm (python-tlsh): Update to 3.4.5.
* gnu: python-cryptography: Update to 2.3.1.Marius Bakke2018-09-10
| | | | | * gnu/packages/python-crypto.scm (python-cryptography-vectors, python-cryptography): Update to 2.3.1.
* gnu: cloc: Update source hash.Tobias Geerinckx-Rice2018-09-10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | The upstream tarball was modified in place. The only changes are: --- /gnu/store/5v39h6zjs33hj5dm2yggz5qk0mva00bs-cloc-1.78.tar.gz +++ /gnu/store/pm5ghks76vv6awv3969yvi7qxqfnfs1l-cloc-1.78.tar.gz ├── filetype from file(1) │ @@ -1 +1 @@ │ -gzip compressed data, last modified: Fri Sep 7 18:22:49 2018, from Unix │ +gzip compressed data, last modified: Sat Sep 8 14:09:43 2018, from Unix │ --- 5v39h6zjs33hj5dm2yggz5qk0mva00bs-cloc-1.78.tar ├── +++ pm5ghks76vv6awv3969yvi7qxqfnfs1l-cloc-1.78.tar │ ├── file list │ │ @@ -1,13 +1,13 @@ │ │ -rwxrwxr-x 0 al (1000) al (1000) 545021 2018-09-07 18:21:22 cloc-1.78/cloc │ │ -rwxrwxr-x 0 al (1000) al (1000) 1818 2018-09-07 18:21:22 cloc-1.78/sqlite_formatter │ │ -drwxrwxr-x 0 al (1000) al (1000) 0 2018-09-07 18:21:22 cloc-1.78/Unix/ │ │ --rwxrwxr-x 0 al (1000) al (1000) 498571 2018-09-07 18:21:22 cloc-1.78/Unix/cloc │ │ +drwxrwxr-x 0 al (1000) al (1000) 0 2018-09-08 14:09:23 cloc-1.78/Unix/ │ │ +-rwxrwxr-x 0 al (1000) al (1000) 498537 2018-09-08 14:09:22 cloc-1.78/Unix/cloc │ │ -rwxrwxr-x 0 al (1000) al (1000) 32382 2018-09-07 18:21:22 cloc-1.78/Unix/t/00_C.t │ │ -rwxrwxr-x 0 al (1000) al (1000) 12614 2018-09-07 18:21:22 cloc-1.78/Unix/t/01_opts.t │ │ -rw-rw-r-- 0 al (1000) al (1000) 862 2018-09-07 18:21:22 cloc-1.78/Unix/README │ ├── cloc-1.78/Unix/cloc │ │ @@ -1,8 +1,7 @@ │ │ -#!/usr/local/perl/5.28.0/bin/perl │ │ #!/usr/bin/env perl * gnu/packages/code.scm (cloc)[source]: Update sha256 hash.
* gnu: nano: Update to 3.0.Leo Famulari2018-09-10
| | | | * gnu/packages/nano.scm (nano): Update to 3.0.
* gnu: linux-libre: Update to 4.18.7.Mark H Weaver2018-09-10
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.7. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.69.Mark H Weaver2018-09-10
| | | | | * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.69. (%linux-libre-4.14-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.126.Mark H Weaver2018-09-10
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.126.
* gnu: linux-libre@4.4: Update to 4.4.155.Mark H Weaver2018-09-10
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.155.
* gnu: gnome-mpv: Update to 0.15.Tobias Geerinckx-Rice2018-09-10
| | | | * gnu/packages/video.scm (gnome-mpv): Update to 0.15.
* gnu: fortify-headers: Update to 1.0.Tobias Geerinckx-Rice2018-09-10
| | | | * gnu/packages/suckless.scm (fortify-headers): Update to 1.0.
* gnu: python-genshi: Update to 0.7.1.Tobias Geerinckx-Rice2018-09-10
| | | | | | | | | | | | | * gnu/packages/python-web.scm (python-genshi): Update to 0.7.1. [source]: Use GIT-FETCH and GIT-FILE-NAME. Remove patches. * gnu/packages/patches/python-genshi-add-support-for-python-3.4-AST.patch, gnu/packages/patches/python-genshi-buildable-on-python-2.7.patch, gnu/packages/patches/python-genshi-disable-speedups-on-python-3.3.patch, gnu/packages/patches/python-genshi-fix-tests-on-python-3.5.patch, gnu/packages/patches/python-genshi-isstring-helper.patch, gnu/packages/patches/python-genshi-stripping-of-unsafe-script-tags.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
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