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* gnu: perl-feed-find: Fix build with Perl 5.26.0.•••* gnu/packages/web.scm (perl-feed-find)[arguments]: Set PERL_USE_UNSAFE_INC in new 'set-env' phase. Leo Famulari2017-07-27
* gnu: perl-encode-hanextra: Fix build with Perl 5.26.0.•••* gnu/packages/perl.scm (perl-encode-hanextra)[arguments]: Set PERL_USE_UNSAFE_INC in new 'set-env' phase. Leo Famulari2017-07-27
* gnu: po4a: Work around "dotless @INC" build issues.•••* gnu/packages/gettext.scm (po4a)[arguments]: Add build phase "set-search-path". Ricardo Wurmus2017-07-27
* gnu: synfig: Fix boost build error.•••* gnu/packages/animation.scm (synfig)[arguments]: Add phase "fix-boost-build-error". Ricardo Wurmus2017-07-26
* gnu: perl-anyevent: Update to 7.14.•••* gnu/packages/libevent.scm (perl-anyevent): Update to 7.14. Efraim Flashner2017-07-26
* gnu: perl-data-dumper-concise: Update to 2.023.•••* gnu/packages/perl.scm (perl-data-dumper-concise): Update to 2.023. [source]: Update source uri. Efraim Flashner2017-07-24
* gnu: perl-context-preserve: Update to 0.02.•••* gnu/packages/perl.scm (perl-context-preserve): Update to 0.02. Efraim Flashner2017-07-24
* gnu: python-pexpect: Add dependency on the full Bash.•••Fixes a regression introduced in 704243e0c6ec5ac86e2f45aaa469717e60b89124. * gnu/packages/python.scm (python-pexpect)[native-inputs]: Add BASH. Ludovic Courtès2017-07-24
* gnu: gnome-mime-data: Do not use the bundled intltool.•••* gnu/packages/gnome.scm (gnome-mime-data)[arguments]: New field. Ludovic Courtès2017-07-24
* gnu: perl: Work around "dotless @INC" build issues.•••* gnu/packages/perl.scm (perl-task-weaken)[arguments]: New field. (perl-unicode-normalize): Likewise. * gnu/packages/web.scm (perl-http-server-simple)[arguments]: Add #:phases. Ludovic Courtès2017-07-24
* gnu: perl-regexp-common: Update to 2017060201.•••* gnu/packages/perl.scm (perl-regexp-common): Update to 2017060201. Ludovic Courtès2017-07-24
* Merge branch 'master' into core-updatesLeo Famulari2017-07-23
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| * gnu: isc-dhcp: Update bundled bind to 9.9.10-P3.•••This fixes a regression introduced in the fix for CVE-2017-3142, in BIND 9.9.10-P2, commit ecb232bdfcb2718de5944bcf4d9c4e288ec41519. See 'CHANGELOG' in the source distribution for more information. * gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P3. Leo Famulari2017-07-23
| * gnu: bind: Update to 9.11.1-P3.•••This fixes a regression introduced in the fix for CVE-2017-3142, in BIND 9.11.1-P2, commit faa1369e3cb72bda4ba8b63029d0ad780df9cf78. See 'CHANGELOG' in the source distribution for more information. * gnu/packages/dns.scm (isc-bind): Update to 9.11.1-P3. Leo Famulari2017-07-23
| * gnu: ncurses/gpm: Move to (gnu packages ncurses).•••This is needed to avoid compilation problems caused by the cyclic dependency between (gnu packages ncurses) and (gnu packages linux). * gnu/packages/linux.scm (ncurses/gpm): Move to ... * gnu/packages/ncurses.scm (ncurses/gpm): ... here. Fix misleading indentation. Add (gnu packages linux) to the module imports. Mark H Weaver2017-07-23
| * gnu: Add support for aarch64's compiled kernel.•••* gnu/packages/linux.scm (linux-libre)[arguments]: Add to the regex to find and install the aarch64-linux kernel. * gnu/system.scm (system-linux-image-file-name): Add entry for aarch64. Efraim Flashner2017-07-23
| * gnu: Add xf86-video-freedreno.•••* gnu/packages/xorg.scm (xf86-video-freedreno): New variable. Efraim Flashner2017-07-23
| * gnu: Add u-boot-odroid-c2.•••* gnu/packages/bootloaders.scm (u-boot-odroid-c2): New variable. Efraim Flashner2017-07-23
| * gnu: u-boot: Update to 2017.07.•••* gnu/packages/bootloaders.scm (u-boot): Update to 2017.07. Efraim Flashner2017-07-23
| * gnu: tevent: Update to 0.9.33.•••* gnu/packages/samba.scm (tevent): Update to 0.9.33. Marius Bakke2017-07-23
| * gnu: talloc: Update to 2.1.10.•••* gnu/packages/samba.scm (talloc): Update to 2.1.10. Marius Bakke2017-07-23
| * gnu: ldb: Update to 1.1.31.•••* gnu/packages/samba.scm (ldb): Update to 1.1.31. [native-inputs]: Add CMOCKA. Marius Bakke2017-07-23
| * gnu: cmocka: Update to 1.1.1.•••* gnu/packages/check.scm (cmocka): Update to 1.1.1. Marius Bakke2017-07-23
| * gnu: tdb: Update to 1.3.14.•••* gnu/packages/databases.scm (tdb): Update to 1.3.14. Marius Bakke2017-07-23
| * gnu: python-scipy: Update to 0.19.1.•••* gnu/packages/python.scm (python-scipy): Update to 0.19.1. [source]: Use 'pypi-uri'. Marius Bakke2017-07-23
| * gnu: python-matplotlib: Update to 2.0.2.•••* gnu/packages/python.scm (python-matplotlib): Update to 2.0.2. [source]: Use 'pypi-uri'. Marius Bakke2017-07-23
| * gnu: python-pyparsing: Update to 2.2.0.•••* gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to 2.2.0. Marius Bakke2017-07-23
| * gnu: python-pyparsing: Use 'modify-phases' syntax.•••* gnu/packages/python.scm (python-pyparsing)[arguments]<#:phases>: Use 'modify-phases'. Marius Bakke2017-07-23
| * gnu: Add xmobar.•••gnu/packages/wm.scm (xmobar): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Oleg Pykhalov2017-07-23
| * gnu: bash-completion: Update to 2.7.•••* gnu/packages/bash.scm (bash-completion): Update to 2.7. Efraim Flashner2017-07-23
* | gnu: metabat: Fix boost-related compilation issue.•••Reported by Leo Famulari. * gnu/packages/patches/metabat-fix-boost-issue.patch: New file. * gnu/packages/bioinformatics.scm (metabat): Use it. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft2017-07-23
* | Merge branch 'master' into core-updatesLeo Famulari2017-07-23
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| * gnu: getmail: Update to 5.1.•••* gnu/packages/mail.scm (getmail): Update to 5.1. Signed-off-by: Leo Famulari <leo@famulari.name> ng02017-07-22
| * gnu: metabat: Update to 2.11.1.•••* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1. [source]: Add patch to fix compilation. [arguments]: Adjust regular expressions modifying 'SConstruct'. * gnu/packages/patches/metabat-fix-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft2017-07-23
| * gnu: python-plastid: Update to 0.4.8.•••* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.4.8. Ben Woodcroft2017-07-23
| * gnu: bcftools: Update to 1.5.•••* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5. [origin]: Remove fix-makefile patch. [arguments]: Add configure flags, add LIBS make flag. Do not delete configure phase. * gnu/packages/patches/bcftools-fix-makefile.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Ben Woodcroft2017-07-23
| * gnu: samtools: Update to 1.5.•••* gnu/packages/bioinformatics.scm (samtools): Update to 1.5. Ben Woodcroft2017-07-23
| * gnu: htslib: Update to 1.5.•••* gnu/packages/bioinformatics.scm (htslib): Update to 1.5. Ben Woodcroft2017-07-23
| * gnu: python-pysam: Update to 0.11.2.2.•••* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.11.2.2. Ben Woodcroft2017-07-23
| * gnu: bamm: Use htslib-1.3.•••* gnu/packages/bioinformatics (htslib-1.3): New variable. (bamm)[inputs]: Replace htslib with htslib-1.3. Ben Woodcroft2017-07-23
| * gnu: bcftools: Update to 1.4.1.•••* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1. [arguments]: Move Makefile modifications from here ... [source]: ... to added patch. Adjust patch for update to 1.4. * gnu/packages/patches/bcftools-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Ben Woodcroft2017-07-23
| * gnu: samtools: Update to 1.4.1.•••* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1. [arguments]: Add '--with-htslib=system' configure flag. [inputs]: Add htslib. Ben Woodcroft2017-07-23
| * gnu: htslib: Update to 1.4.1.•••* gnu/packages/bioinformatics.scm (htslib): Update to 1.4.1. [inputs]: Add curl, openssl. Ben Woodcroft2017-07-23
| * gnu: samtools: Use "modify-phases" syntax.•••* gnu/packages/bioinformatics.scm (samtools)[arguments]: Use "modify-phases" syntax. Ben Woodcroft2017-07-23
| * gnu: bspwm: Update to 0.9.3.•••* gnu/packages/wm.scm (bspwm): Update to 0.9.3. Signed-off-by: Leo Famulari <leo@famulari.name> ng02017-07-22
| * gnu: Add oksh.•••* gnu/packages/shells.scm (oksh): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> ng02017-07-22
| * gnu: quassel: Enable TLS.•••* gnu/packages/patches/quassel-fix-tls-check.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/irc.scm (quassel)[source]: Use it. Signed-off-by: Leo Famulari <leo@famulari.name> Ryan Moe2017-07-22
| * gnu: youtube-dl: Update to 2017.07.23.•••* gnu/packages/video.scm (youtube-dl): Update to 2017.07.23. Tobias Geerinckx-Rice2017-07-23
| * gnu: mosh: Update to 1.3.2.•••* gnu/packages/ssh.scm (mosh): Update to 1.3.2. Tobias Geerinckx-Rice2017-07-23
| * gnu: Add openmolar.•••* gnu/packages/medical.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Co-authored-by: Quiliro <quiliro@fsfla.org> Ricardo Wurmus2017-07-22
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