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* gnu: python-wrapper: Append "-wrapper" to the underlying package name.Ludovic Courtès2015-12-22
| | | | | | | | Reported by Federico Beffa <beffa@ieee.org>. * gnu/packages/python.scm (wrap-python3): Change the default value of 'name' to include the name of PYTHON. This disambiguates between 'python-minimal-wrapper' and 'python-wrapper'.
* gnu: commencement: Build Bison deterministically.Ludovic Courtès2015-12-19
| | | | | | Before that entries in liby.a would contain the build time. * gnu/packages/commencement.scm (bison-boot1): Add #:make-flags.
* build-system/gnu: Always pass "-D" to strip/objcopy.Ludovic Courtès2015-12-18
| | | | | | | * guix/build-system/gnu.scm (gnu-build, gnu-cross-build): Add "-D" to #:strip-flags. * guix/build/gnu-build-system.scm (strip): Likewise. Also pass "-D" to OBJCOPY-COMMAND.
* gnu: commencement: Build the final Bash with "bison-boot1".Ludovic Courtès2015-12-18
| | | | | | | This removes a round of Bison + Flex + M4 + Perl rebuild. * gnu/packages/commencement.scm (bash-final): Add 'native-inputs' field pointing to BISON-BOOT1.
* gnu: commencement: Avoid redundant Perl rebuild.Ludovic Courtès2015-12-18
| | | | | | | | | | This removes a redundant (yet different) "perl-boot0" node from the early derivation graph. * gnu/packages/commencement.scm (bison-boot1): Move 'native-inputs' field to the final package. Previously PERL-BOOT0 got rebuilt with %BOOT0-INPUTS, leading to a different derivation. (static-bash-for-glibc): Likewise.
* gnu: commencement: Add "-boot0" to early packages.Ludovic Courtès2015-12-18
| | | | | | * gnu/packages/commencement.scm (diffutils-boot0)[name]: New field. * gnu/packages/commencement.scm (findutils-boot0, file-boot0, perl-boot0): Change 'name' field to include "-boot0".
* gnu: gcc: Prefer language-specific variables over 'CPATH'.Ludovic Courtès2015-12-18
| | | | | | | | | | | | | | | | Suggested by Andy Wingo <wingo@igalia.com>. Fixes <http://bugs.gnu.org/22186>. * gnu/packages/gcc.scm (gcc-4.7)[native-search-paths]: Remove 'CPATH'; add 'C_INCLUDE_PATH' and 'CPLUS_INCLUDE_PATH' instead. * gnu/packages/gcc.scm (custom-gcc): Add 'search-paths' parameter and honor it. (%generic-search-paths): New variable. (gfortran-4.8, gfortran-4.9, gfortran, gfortran-5, gccgo-4.8): Pass %GENERIC-SEARCH-PATHS to 'custom-gcc'. (gcj)[native-search-paths]: New field. (gcc-objc-4.8, gcc-objc++-4.8): Use 'OBJC_INCLUDE_PATH' and 'OBJCPLUS_INCLUDE_PATH', respectively.
* gnu: commencement: Use GMP 6.0.0a for bootstrapping.Ludovic Courtès2015-12-18
| | | | | | | | * gnu/packages/multiprecision.scm (gmp-6.0): New variable. * gnu/packages/commencement.scm (gcc-boot0, gcc-final): Use it. * gnu/packages/patches/gmp-arm-asm-nothumb.patch: New file, reinstated from before e414a7d. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: glibc: Remove timestamp from 'nscd' binary.Ludovic Courtès2015-12-16
| | | | | | | This makes libc bit-for-bit reproducible per '--rounds=2'. * gnu/packages/base.scm (glibc)[arguments] <pre-configure>: Remove __DATE__ and __TIME__ from nscd_stat.c.
* gnu: pcre: Add "doc" output.Ludovic Courtès2015-12-15
| | | | * gnu/packages/pcre.scm (pcre)[outputs]: New field.
* gnu: util-linux: Do not build static libraries.Ludovic Courtès2015-12-15
| | | | * gnu/packages/linux.scm (util-linux)[arguments]: Pass --disable-static.
* gnu: gettext: Add "doc" output.Ludovic Courtès2015-12-15
| | | | * gnu/packages/gettext.scm (gnu-gettext)[outputs]: New field.
* gnu: ncurses: Add "doc" output.Ludovic Courtès2015-12-15
| | | | | | * gnu/packages/ncurses.scm (ncurses)[outputs]: New field. [arguments] <configure>: Replace standard 'configure' phase. <remove-shebang-phase>: Remove "mandir=" line from 'ncursesw6-config'.
* gnu: ncurses: Add 'TERMINFO_DIRS' search path variable.Ludovic Courtès2015-12-15
| | | | * gnu/packages/ncurses.scm (ncurses)[native-search-paths]: New field.
* gnu: bash: Add "doc" output.Ludovic Courtès2015-12-15
| | | | * gnu/packages/bash.scm (bash)[outputs]: Add "doc" output.
* gnu: grep: Add missing dependency on Perl.Ludovic Courtès2015-12-15
| | | | | * gnu/packages/base.scm (grep)[native-inputs]: New field. * gnu/packages/commencement.scm (grep-final): Likewise.
* gnu: bash: Update to patch level 42.Ludovic Courtès2015-12-15
| | | | * gnu/packages/bash.scm (%patch-series-4.3): Add patches 40 to 42.
* gnu: commencement: Initial Texinfo uses initial Perl.Ludovic Courtès2015-12-13
| | | | | * gnu/packages/commencement.scm (texinfo-boot0)[inputs]: Use PERL-BOOT0.
* gnu: perl: Build deterministically, and make byproducts deterministic.Ludovic Courtès2015-12-13
| | | | | | | | | | | With this, a --rounds=2 build passes, and timestamps in POD files can be controlled with 'SOURCE_DATE_EPOCH'. * gnu/packages/patches/perl-deterministic-ordering.patch, gnu/packages/patches/perl-no-build-time.patch, gnu/packages/patches/perl-source-date-epoch.patch: New files. * gnu/packages/perl.scm (perl)[source]: Use them. * gnu-system.am (dist_patch_DATA): Add them.
* gnu: perl: Update to 5.22.0.Ludovic Courtès2015-12-13
| | | | | | | | | | | | | * gnu/packages/perl.scm (perl)[source]: Update to 5.22.0. Remove "perl-module-pluggable-search.patch" since Module::Pluggable appears to be gone. [arguments] <configure-phase>: Adjust Cwd.pm file name. Replace -std=c89 with -std=gnu89. * gnu/packages/commencement.scm (perl-boot0): Add 'disable-pthreads' phase. * gnu/packages/patches/perl-no-sys-dirs.patch: Update. * gnu/packages/patches/perl-module-pluggable-search.patch: Remove. * gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu: gmp: Disable parallel tests.Andreas Enge2015-12-12
| | | | * gnu/packages/multiprecision.scm (gmp)[arguments]: Disable parallel tests.
* build: Add missing patches to the distribution.Ludovic Courtès2015-12-12
| | | | | * gnu-system.am (dist_patch_DATA): Add glibc-hurd-extern-inline.patch and plink-1.07-unclobber-i.patch.
* Merge branch 'master' into core-updatesLudovic Courtès2015-12-12
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| * gnu: numactl: Update to 2.0.11.Andreas Enge2015-12-12
| | | | | | | | | | | | * gnu/packages/linux.scm (numactl)[source]: Update to 2.0.11. [native-inputs]: Drop autotools. [arguments]: Drop phase calling autogen.sh.
| * gnu: wget: Update to 1.17.1.Mark H Weaver2015-12-11
| | | | | | | | * gnu/packages/wget.scm (wget): Update to 1.17.1.
| * gnu: Move sparsehash to datastructures module.Ricardo Wurmus2015-12-11
| | | | | | | | | | | | * gnu/packages/crypto.scm (sparsehash): Move variable to... * gnu/packages/datastructures.scm: ...new file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
| * gnu: Add r-lattice.Ricardo Wurmus2015-12-11
| | | | | | | | * gnu/packages/statistics.scm (r-lattice): New variable.
| * gnu: Add r-gridbase.Ricardo Wurmus2015-12-11
| | | | | | | | * gnu/packages/statistics.scm (r-gridbase): New variable.
| * gnu: Add r-plotrix.Ricardo Wurmus2015-12-11
| | | | | | | | * gnu/packages/statistics.scm (r-plotrix): New variable.
| * gnu: Add r-readr.Ricardo Wurmus2015-12-11
| | | | | | | | * gnu/packages/statistics.scm (r-readr): New variable.
| * gnu: Rename r-data.table to r-data-table.Ricardo Wurmus2015-12-11
| | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-data.table): Rename variable ... (r-data-table): ... to this. [description]: Clarify relation to data.frame. [license]: Use correct license.
| * import: cran: Parse DESCRIPTION instead of HTML.Ricardo Wurmus2015-12-11
| | | | | | | | | | | | | | | | | | * guix/import/cran.scm (description->alist, listify, beautify-description, description->package): New procedures. (table-datum, downloads->url, nodes->text, cran-sxml->sexp): Remove proceduces. (latest-release): Use parsed DESCRIPTION instead of SXML. * tests/cran.scm: Rewrite to match importer.
| * import: cran: Match more license strings.Ricardo Wurmus2015-12-11
| | | | | | | | | | * guix/import/cran.scm (string->license): Match more license strings to license symbols.
| * gnu: Add snap-aligner.Ben Woodcroft2015-12-11
| | | | | | | | * gnu/packages/bioinformatics.scm (snap-aligner): New variable.
| * gnu: python-certifi: Update to 2015.11.20.1.Efraim Flashner2015-12-11
| | | | | | | | | | * gnu/packages/python.scm (python-certifi): Update to 2015.11.20.1. [source]: Change to pypi syntax.
| * gnu: gnumeric: Add python scripting support.Efraim Flashner2015-12-11
| | | | | | | | | | * gnu/packages/gnome.scm (gnumeric): Do it. [inputs]: Add python2, python2-pygobject-2.
| * gnu: gnumeric: Update to 1.12.24.Efraim Flashner2015-12-11
| | | | | | | | | | | | * gnu/packages/gnome.scm (gnumeric): Update to 1.12.24. [inputs]: Add librsvg, libxslt. [arguments]: Use "modify-phases" syntax.
| * gnu: goffice: Update to 0.10.24.Efraim Flashner2015-12-11
| | | | | | | | * gnu/packages/gnome.scm (goffice): Update to 0.10.24.
| * gnu: gvfs: Update to 1.26.2.Efraim Flashner2015-12-11
| | | | | | | | | | * gnu/packages/gnome.scm (gvfs): Update to 1.26.2. [inputs]: Add gcr.
| * emacs: Handle compiled autoloads.Alex Kost2015-12-11
| | | | | | | | | | | | * emacs/guix-emacs.el (guix-emacs-autoloads-regexp): New variable. (guix-emacs-find-autoloads-in-directory): Return a list of autoloads without extensions.
| * gnu: linux-libre: Update to 4.3.2.Mark H Weaver2015-12-11
| | | | | | | | | | | | | | | | * gnu/packages/linux.scm (linux-libre): Update to 4.3.2. [native-inputs]: Add openssl. * gnu/packages/linux-libre-x86_64.conf, gnu/packages/linux-libre-i686.conf: Update for 4.3.x, based on <https://jxself.org/git/kernel-configs.git>.
| * gnu: python-requests: Update to 2.8.1.Efraim Flashner2015-12-10
| | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-requests): Update to 2.8.1. [native-inputs]: Move python-setuptools here. [inputs]: Remove python-certifi. [propagated-inputs]: Add python-py, python-pytest, python-pytest-cov, python-wheel. [arguments]: Enable tests.
| * gnu: Add python-wheel.Efraim Flashner2015-12-10
| | | | | | | | * gnu/packages/python.scm (python-wheel, python2-wheel): New variables.
| * gnu: Add python-pytest-cov.Efraim Flashner2015-12-10
| | | | | | | | | | * gnu/packages/python.scm (python-pytest-cov, python2-pytest-cov): New variables.
| * gnu: Add libconfig.Roel Janssen2015-12-10
| | | | | | | | * gnu/packages/textutils.scm (libconfig): New variable.
| * gnu: python-pytz: Update to 2015.7.Efraim Flashner2015-12-10
| | | | | | | | | | | | | | * gnu/packages/python.scm (python-pytz): Update to 2015.7. [source]: Change uri to pypi's location. [home-page]: Change to new website. [license]: Change to expat.
| * gnu: ghc-cryptonite: Update description.Ricardo Wurmus2015-12-10
| | | | | | | | | | * gnu/packages/haskell.scm (ghc-cryptonite)[description]: Shorten overly technical package description.
| * gnu: python-biopython, python2-biopython: Update to 1.66.Ben Woodcroft2015-12-10
| | | | | | | | | | * gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): Update to 1.66. [source]: Use PyPi instead of biopython.org.
| * gnu: Add ghc-pandoc.Ricardo Wurmus2015-12-10
| | | | | | | | * gnu/packages/haskell.scm (ghc-pandoc): New variable.
| * gnu: Add ghc-http-client-tls.Ricardo Wurmus2015-12-10
| | | | | | | | * gnu/packages/haskell.scm (ghc-http-client-tls): New variable.
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