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* gnu: php: Update to 7.3.6.Julien Lepiller2019-05-31
| | | | * gnu/packages/php.scm (php): Update to 7.3.6.
* gnu: Add r-birta.Ricardo Wurmus2019-05-31
| | | | * gnu/packages/bioconductor.scm (r-birta): New variable.
* gnu: Add r-birewire.Ricardo Wurmus2019-05-31
| | | | * gnu/packages/bioconductor.scm (r-birewire): New variable.
* gnu: r-seriation: Update to 1.2-5.Ricardo Wurmus2019-05-31
| | | | * gnu/packages/cran.scm (r-seriation): Update to 1.2-5.
* gnu: emacs-diff-hl: Update to 1.8.6.Brian Leung2019-05-31
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-diff-hl): Update to 1.8.6. [source]: Fetch from git. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: emacs-helm: Update to 3.2.Brian Leung2019-05-31
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.2. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: emacs-counsel-tramp: Update to 0.6.3.Brian Leung2019-05-31
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-counsel-tramp): Update to 0.6.3. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: emacs-editorconfig: Update to 0.8.0.Brian Leung2019-05-31
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-editorconfig): Update to 0.8.0. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: emacs-exec-path-from-shell: Update to 1.12.Brian Leung2019-05-31
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-exec-path-from-shell): Update to 1.12. [source]: Use git-fetch. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add emacs-reformatter.LaFreniere, Joseph2019-05-31
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-reformatter): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add emacs-ivy-pass.Joseph LaFreniere2019-05-31
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-ivy-pass): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: kitty: Update to 0.14.1.Rutger Helling2019-05-31
| | | | * gnu/packages/terminals.scm (kitty): Update to 0.14.1.
* gnu: diffoscope: Update to version 115-1.7f3416f.Vagrant Cascadian2019-05-30
| | | | | | | | | * gnu/packages/package-management (diffoscope): [package] Update to version 115-1.7f3416f. [source] Switch to using git-fetch. [inputs] Move python-pytest and python-chardet ... [native-inputs] ... to here. [arguments] Move comment to fit line length.
* gnu: r-biocviews: Update to 1.52.1.Ricardo Wurmus2019-05-30
| | | | * gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.1.
* gnu: r-tibble: Update to 2.1.2.Ricardo Wurmus2019-05-30
| | | | * gnu/packages/statistics.scm (r-tibble): Update to 2.1.2.
* gnu: r-dose: Update to 3.10.1.Ricardo Wurmus2019-05-30
| | | | * gnu/packages/bioconductor.scm (r-dose): Update to 3.10.1.
* gnu: Add gthumb.Andy Tai2019-05-30
| | | | | | | * gnu/packages/gnome.scm (gthumb): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: sddm: Add QtQuick-related dependencies to sddm.Reza Alizadeh Majd2019-05-29
| | | | | | | | * gnu/packages/display-managers.scm (sddm): add QtQuick related dependencies to sddm package in order to `sddm-greeter` application to load user defined themes which are based on QtQuick. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* publish: Factorize 'compress-nar'.Ludovic Courtès2019-05-29
| | | | | * guix/scripts/publish.scm (compress-nar): New procedure. (bake-narinfo+nar): Use it.
* publish: Remove outdated comment.Ludovic Courtès2019-05-29
| | | | * guix/scripts/publish.scm (make-request-handler): Remove outdated TODO.
* gnu: r-statmod: Update to 1.4.32.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/statistics.scm (r-statmod): Update to 1.4.32.
* gnu: r-fields: Update to 9.8-3.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/cran.scm (r-fields): Update to 9.8-3.
* gnu: r-bayestestr: Update to 0.2.0.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/cran.scm (r-bayestestr): Update to 0.2.0.
* gnu: Use make-linux-libre-headers.Carl Dong2019-05-29
| | | | | | | | | | | | | | * gnu/packages/linux.scm (make-linux-libre-headers): New variable. (linux-libre): Rename to... (linux-libre-5.1): ...this. (linux-libre-headers): Rename to... (linux-libre-headers-4.14.67): ...this. (linux-libre-5.1, linux-libre-headers-4.14.67): Use make-linux-libre-headers. (linux-libre-5.1, linux-libre-headers-5.1, linux-libre-headers-4.19, %linux-libre-4.15-version, %linux-libre-4.15-hash, linux-libre-4.15, linux-libre-headers-4.15, linux-libre-headers-4.14): New variables. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: cross-base: Allow non-default linux-headers.Carl Dong2019-05-29
| | | | | | | * gnu/packages/cross-base.scm (cross-kernel-headers): Add LINUX-HEADERS optional argument. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: Add basic support for riscv64-linux-gnu targets.Carl Dong2019-05-29
| | | | | | | | | * gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add "riscv64-linux". * gnu/packages/linux.scm (system->linux-architecture): Add "riscv" prefix. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: Add childsplay.Nicolas Goaziou2019-05-29
| | | | * gnu/packages/education.scm (childsplay): New variable.
* installer: Fix wifi menu crash with hidden SSIDs.Mathieu Othacehe2019-05-29
| | | | | | | | | | This fixes https://issues.guix.gnu.org/issue/35622. * gnu/installer/connman.scm (<service>): Mention that name may be false. * gnu/installer/newt/wifi.scm (wifi-services): Filter out wifi services without name. Co-authored by: Pierre Neidhardt <mail@ambrevar.xyz>
* gnu: awscli: Add missing input.Ricardo Wurmus2019-05-29
| | | | | | | | Fixes <https://bugs.gnu.org/35980>. * gnu/packages/python-web.scm (awscli)[arguments]: Add build phase "fix-reference-to-groff". [inputs]: Add groff.
* gnu: r-scran: Update to 1.12.1.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.1.
* gnu: r-scater: Update to 1.12.2.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.2.
* gnu: r-sva: Update to 3.32.1.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.1.
* gnu: r-genomicfeatures: Update to 1.36.1.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.1.
* gnu: r-edger: Update to 3.26.4.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.4.
* gnu: r-variantannotation: Update to 1.30.1.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.1.
* import: cran: Ignore invalid packages from the system requirements.Ricardo Wurmus2019-05-28
| | | | | * guix/import/cran.scm (description->package): Filter invalid packages from the list of system requirements.
* gnu: r-atacseqqc: Update to 1.8.1.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.1.
* gnu: r-icobra: Update to 1.12.1.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.1.
* gnu: r-chippeakanno: Update to 3.18.1.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.1.
* gnu: r-geosphere: Update to 1.5-10.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-geosphere): Update to 1.5-10.
* gnu: r-ggfortify: Update to 0.4.7.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-ggfortify): Update to 0.4.7.
* gnu: r-wgcna: Update to 1.68.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-wgcna): Update to 1.68.
* gnu: r-bookdown: Update to 0.11.Ricardo Wurmus2019-05-28
| | | | | * gnu/packages/cran.scm (r-bookdown): Update to 0.11. [propagated-inputs]: Add ghc-pandoc; remove r-yaml.
* gnu: r-upsetr: Update to 1.4.0.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-upsetr): Update to 1.4.0.
* gnu: r-epi: Update to 2.37.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-epi): Update to 2.37.
* gnu: r-etm: Update to 1.0.5.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-etm): Update to 1.0.5.
* gnu: r-cmprsk: Update to 2.2-8.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-cmprsk): Update to 2.2-8.
* gnu: r-ks: Update to 1.11.5.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-ks): Update to 1.11.5.
* gnu: r-bayesplot: Update to 1.7.0.Ricardo Wurmus2019-05-28
| | | | | * gnu/packages/cran.scm (r-bayesplot): Update to 1.7.0. [propagated-inputs]: Add r-glue, r-tibble, and r-tidyselect.
* gnu: r-refgenome: Update to 1.7.7.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-refgenome): Update to 1.7.7.
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