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* gnu: Add saga.Guillaume Le Vaillant2020-03-24
| | | | * gnu/packages/geo.scm (saga): New variable.
* gnu: Add grass.Guillaume Le Vaillant2020-03-24
| | | | * gnu/packages/geo.scm (grass): New variable.
* gnu: Add python-owslib.Guillaume Le Vaillant2020-03-24
| | | | * gnu/packages/python-xyz.scm (python-owslib): New variable.
* gnu: r-harmony: Update to 0.1.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/cran.scm (r-harmony): Update to 0.1. [native-inputs]: Add autoconf.
* gnu: r-shiny: Update to 1.4.0.2.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/cran.scm (r-shiny): Update to 1.4.0.2.
* gnu: r-multiassayexperiment: Update to 1.12.5.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.5. [native-inputs]: Add r-knitr.
* gnu: r-bigpint: Update to 1.2.2.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/bioconductor.scm (r-bigpint): Update to 1.2.2. [native-inputs]: Add r-knitr.
* gnu: r-biosigner: Update to 1.14.4.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.4.
* gnu: r-gosemsim: Update to 2.12.1.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.1. [native-inputs]: Add r-knitr.
* gnu: r-tximport: Update to 1.14.2.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/bioinformatics.scm (r-tximport): Update to 1.14.2. [native-inputs]: Add r-knitr.
* gnu: r-caret: Update to 6.0-86.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/cran.scm (r-caret): Update to 6.0-86. [native-inputs]: Add r-knitr.
* gnu: r-batchtools: Update to 0.9.13.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/cran.scm (r-batchtools): Update to 0.9.13. [native-inputs]: Add r-knitr.
* gnu: r-mcmc: Update to 0.9-7.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/cran.scm (r-mcmc): Update to 0.9-7.
* gnu: r-proc: Update to 1.16.2.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/cran.scm (r-proc): Update to 1.16.2.
* gnu: r-xgboost: Update to 1.0.0.1.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.1. [native-inputs]: Add r-knitr.
* gnu: r-radiant-data: Update to 1.3.4.Ricardo Wurmus2020-03-24
| | | | | | * gnu/packages/cran.scm (r-radiant-data): Update to 1.3.4. [propagated-inputs]: Remove r-gridextra; add r-mass, r-patchwork, and r-randomizr.
* gnu: r-patchwork: Update to 1.0.0.Ricardo Wurmus2020-03-24
| | | | | | * gnu/packages/cran.scm (r-patchwork): Update to 1.0.0. [source]: Fetch from CRAN. [native-inputs]: Add r-knitr.
* gnu: r-igraph: Update to 1.2.5.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/graph.scm (r-igraph): Update to 1.2.5.
* gnu: r-robustbase: Update to 0.93-6.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/statistics.scm (r-robustbase): Update to 0.93-6.
* gnu: r-hmisc: Update to 4.4-0.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/statistics.scm (r-hmisc): Update to 4.4-0.
* gnu: r-pkgmaker: Update to 0.31.1.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/statistics.scm (r-pkgmaker): Update to 0.31.1.
* gnu: r-dt: Update to 0.13.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/statistics.scm (r-dt): Update to 0.13. [native-inputs]: Add r-knitr.
* gnu: r-locfit: Update to 1.5-9.2.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.2.
* gnu: Add r-randomizr.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/cran.scm (r-randomizr): New variable.
* gnu: sbcl: Increase maximum heap size to 2Gb.Guillaume Le Vaillant2020-03-24
| | | | | * gnu/packages/lisp.scm (sbcl)[arguments]: Add the "--dynamic-space-size=2Gb" option in the build phase.
* gnu: dialog: Update to 1.3-20200228.Michael Rohleder2020-03-23
| | | | | | * gnu/packages/ncurses.scm (dialog): Update to 1.3-20200228. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Git: Update to 2.26.0.Leo Famulari2020-03-23
| | | | | * gnu/packages/version-control.scm (git): Update to 2.26.0. [arguments]: Adjust the 'install-credential-netrc' phase to upstream changes.
* Revert "gnu: youtube-dl: Add 'ffmpeg' as input."Mathieu Othacehe2020-03-23
| | | | This reverts commit 4233e74b39635d5ef4dde204ecc26dcc894d9467.
* gnu: Mutt: Update to 1.13.4.Leo Famulari2020-03-23
| | | | | * gnu/packages/mail.scm (mutt): Update to 1.13.4. [source]: Prefer HTTPS URL and replace FTP URL with HTTP.
* gnu: sord: Add pcre to inputs.Alexandros Theodotou2020-03-23
| | | | * gnu/packages/rdf.scm (sord)[inputs]: Add pcre needed for sord_validate.
* gnu: youtube-dl: Add zsh completion.Brice Waegeneire2020-03-23
| | | | | | | * gnu/packages/video.scm (youtube-dl)[arguments]: Add phase install-completion. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
* gnu: youtube-dl: Add 'ffmpeg' as input.Brice Waegeneire2020-03-23
| | | | | | | | * gnu/packages/video.scm (youtube-dl)[arguments]: Add phase wrap-executable. [inputs]: Add ffmpeg. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
* doc: Fix typo in example.Brice Waegeneire2020-03-23
| | | | | | | * doc/guix.texi (Invoking guix deploy): Fix example to use '%user' variable defined above. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
* system: Export 'operating-system-kernel-loadable-modules'.Brice Waegeneire2020-03-23
| | | | | | * gnu/system.scm: Export 'operating-system-kernel-loadable-modules'. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
* gnu: emacs-lua-mode: Update to 20191204.Maxim Cournoyer2020-03-23
| | | | * (emacs-lua-mode): Update to 20191204.
* gnu: emacs-ert-runner: Update to 0.8.0.Maxim Cournoyer2020-03-23
| | | | * (emacs-ert-runner): Update to 0.8.0.
* gnu: emacs-dash: Update to 2.17.0.Maxim Cournoyer2020-03-23
| | | | * (emacs-dash): Update to 2.17.0.
* installer: Fix cow-store umount issue.Mathieu Othacehe2020-03-23
| | | | | * gnu/installer/final.scm (kill-cow-users): Ignore exception that could be raised if a process disappears between reading its pid and its maps file.
* gnu: parallel: Update to 20200322.Tobias Geerinckx-Rice2020-03-23
| | | | * gnu/packages/parallel.scm (parallel): Update to 20200322.
* gnu: extremetuxracer: Update to 0.8.0.Tobias Geerinckx-Rice2020-03-23
| | | | * gnu/packages/games.scm (extremetuxracer): Update to 0.8.0.
* gnu: Add zlfo.base-for-series-3269Alexandros Theodotou2020-03-23
| | | | | | * gnu/packages/music.scm (zlfo): New variable. Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
* gnu: Add ztoolkit-rsvg.Alexandros Theodotou2020-03-23
| | | | | | * gnu/packages/audio.scm (ztoolkit-rsvg): New variable. Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net> [with modifications]
* gnu: Add ztoolkit.Alexandros Theodotou2020-03-23
| | | | | | * gnu/packages/audio.scm (ztoolkit): New variable. Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
* gnu: Add circos.Roel Janssen2020-03-23
| | | | | | * gnu/local.mk: Register circos-remove-findbin.patch. * gnu/packages/patches/circos-remove-findbin.patch: New file. * gnu/packages/perl.scm: New variable.
* gnu: Add python-gcovr.Alexandros Theodotou2020-03-23
| | | | | | * gnu/packages/python-xyz.scm (python-gcovr): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add lv2toweb.Alexandros Theodotou2020-03-23
| | | | | | * gnu/packages/audio.scm (lv2toweb): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* machine: ssh: Better report missing initrd modules.Ludovic Courtès2020-03-23
| | | | | * gnu/machine/ssh.scm (machine-check-initrd-modules): Improve message upon module mismatch.
* deploy: Write a message upon successful deployment.Ludovic Courtès2020-03-23
| | | | | * guix/scripts/deploy.scm (guix-deploy): Write message upon successful deployment.
* deploy: Show what machines will be deployed.Ludovic Courtès2020-03-23
| | | | | * guix/scripts/deploy.scm (show-what-to-deploy): New procedure. (guix-deploy): Call it.
* ui: Add 'indented-string'.Ludovic Courtès2020-03-23
| | | | | | | | | * guix/scripts/pull.scm (display-news-entry): Remove extra space in format string for 'indented-string'. (indented-string): Remove. (display-new/upgraded-packages)[pretty]: Pass #:initial-indent? to 'indented-string'. * guix/ui.scm (indented-string): New procedure.
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