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* Merge branch 'master' into core-updatesLudovic Courtès2018-06-01
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| * gnu: icecat: Add more fixes from upstream esr52.Mark H Weaver2018-06-01
| | | | | | | | | | * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr52 repository.
| * self: Show backtraces on more columns.Ludovic Courtès2018-06-01
| | | | | | | | * guix/self.scm (compiled-modules): Add "COLUMNS" to #:env-vars.
| * self: Add dependency on guile-gdbm-ffi.Ludovic Courtès2018-06-01
| | | | | | | | | | | | | | | | | | | | | | Fixes a regression introduced in 331ac4cc239727992329207ba428b3f26cae91d9 whereby "guile-gdbm-ffi" would now be mandatory. * guix/self.scm (specification->package): Add "guile-gdbm-ffi" and "guile2.0-gdbm-ffi". (compiled-guix)[guile-gdbm-ffi]: New variables. [dependencies]: Add it.
| * gnu: qtbase: Fix build on older kernels.Ricardo Wurmus2018-06-01
| | | | | | | | | | * gnu/packages/qt.scm (qtbase)[arguments]: Add configure flags "-no-feature-getentropy" and "-no-feature-renameat2".
| * Add (guix store deduplication).Caleb Ristvedt2018-06-01
| | | | | | | | | | | | | | | | | | | | | | | | * guix/store/database.scm (register-path): Add #:deduplicate? and call 'deduplicate' when it's true. (counting-wrapper-port, nar-sha256): Move to... * guix/store/deduplication.scm: ... here. New file. * tests/store-deduplication.scm: New file. * Makefile.am (STORE_MODULES): Add deduplication.scm. (SCM_TESTS) [HAVE_GUILE_SQLITE3]: Add store-deduplication.scm. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
| * database: 'register-path' resets timestamps.Ludovic Courtès2018-06-01
| | | | | | | | | | * guix/store/database.scm (reset-timestamps): New procedure. (register-path): Use it.
| * Add (gnu store database).Caleb Ristvedt2018-06-01
| | | | | | | | | | | | | | | | | | | | | | * guix/config.scm.in (%store-database-directory): New variable. * guix/store/database.scm: New file. * tests/store-database.scm: New file. * Makefile.am (STORE_MODULES): New variable. (MODULES, MODULES_NOT_COMPILED): Adjust accordingly. (SCM_TESTS) [HAVE_GUILE_SQLITE3]: Add tests/store-database.scm. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
| * build: Check for Guile-SQLite3.Ludovic Courtès2018-06-01
| | | | | | | | | | | | | | | | * m4/guix.m4 (GUIX_CHECK_GUILE_SQLITE3): New macro. * configure.ac: Use it and define 'HAVE_GUILE_SQLITE3'. * guix/self.scm (specification->package): Add "guile-sqlite3". (compiled-guix)[guile-sqlite3]: New variable. [dependencies]: Add it.
| * vm: Use 'with-extensions'.Ludovic Courtès2018-06-01
| | | | | | | | | | * gnu/system/vm.scm (system-docker-image)[build]: Use 'with-extensions'. Remove 'add-to-load-path' calls.
| * profiles: Use 'with-extensions'.Ludovic Courtès2018-06-01
| | | | | | | | | | | | | | * guix/profiles.scm (manual-database)[build]: Use 'with-extensions'. Remove 'add-to-load-path' call. * guix/man-db.scm: Use (gdbm) the normal way; remove 'module-autoload!' call.
| * bootloader: grub: Use 'with-extensions'.Ludovic Courtès2018-06-01
| | | | | | | | | | | | | | * gnu/bootloader/grub.scm (svg->png): Use 'with-extensions'. Remove 'add-to-load-path' calls. * gnu/build/svg.scm: Use (rsvg) and (cairo) the normal way. Remove 'module-autoload!' calls.
| * bootloader: grub: Simplify 'svg->png'.Ludovic Courtès2018-06-01
| | | | | | | | | | * gnu/bootloader/grub.scm (svg->png): Remove now unneeded #:guile-for-build argument.
| * tests: ssh: Use 'with-extensions'.Ludovic Courtès2018-06-01
| | | | | | | | | | * gnu/tests/ssh.scm (run-ssh-test)[test]: Wrap body in 'with-extensions'. Remove %load-path manipulation code.
| * pack: Use 'with-extensions' when referring to (guix docker).Ludovic Courtès2018-06-01
| | | | | | | | | | | | * guix/docker.scm: Use module (json) the normal way. * guix/scripts/pack.scm (docker-image)[build]: Wrap in 'with-extensions'.
| * gexp: Add 'with-extensions'.Ludovic Courtès2018-06-01
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * guix/gexp.scm (<gexp>)[extensions]: New field. (gexp-attribute): New procedure. (gexp-modules): Write in terms of 'gexp-attribute'. (gexp-extensions): New procedure. (gexp->derivation): Add #:effective-version. [extension-flags]: New procedure. Honor extensions of EXP. (current-imported-extensions): New syntax parameter. (with-extensions): New macro. (gexp): Honor CURRENT-IMPORTED-EXTENSIONS. (compiled-modules): Add #:extensions and honor it. (load-path-expression): Likewise. (gexp->script, gexp->file): Honor extensions. * tests/gexp.scm (%extension-package): New variable. ("gexp-extensions & ungexp") ("gexp-extensions & ungexp-splicing") ("gexp-extensions and literal Scheme object") ("gexp->derivation & with-extensions") ("program-file & with-extensions"): New tests. * doc/guix.texi (G-Expressions): Document 'with-extensions'.
| * pack: Adjust test to expect relative symlinks.Ludovic Courtès2018-06-01
| | | | | | | | | | | | | | | | Reported by Chris Marusich <cmmarusich@gmail.com>. Fixes <https://bugs.gnu.org/31560>. * tests/pack.scm ("self-contained-tarball"): Rename 'guile' to 'bin'. Expect 'bin/Guile' to be a relative symlink.
| * tests: Fix arguments in pack test.Ricardo Wurmus2018-06-01
| | | | | | | | | | | | | | This is a follow-up to commit 5ffac538aa604b71814ac74579626f0d3110b96e. * tests/pack.scm (self-contained-tarball): Adjust arguments to "self-contained-tarball".
| * gexp: 'compiled-modules' no longer overrides (guix build utils).Ludovic Courtès2018-06-01
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Until now 'compiled-modules' would override (guix build utils) with its own. Thus, when asked to build a different (guix build utils), via #:module-path, it would fail badly because a (guix build utils) module was already loaded and possibly incompatible with the new one. This happened when running 'guix pull --branch=core-updates' from current master: in 'core-updates', (guix build utils) exports 'ignore-error?' but in 'master' it does not. Thus, 'guix pull' would fail with: no binding `invoke-error?' in module (guix build utils) builder for `/gnu/store/…-module-import-compiled.drv' failed with exit code 1 cannot build derivation `/gnu/store/…-compute-guix-derivation.drv': 1 dependencies couldn't be built This patch fixes it. * guix/gexp.scm (compiled-modules)[build-utils-hack?]: New variable. [build]: Load MODULES/build/utils.scm when it exists.
| * gnu: rust: Add support for building 32-bit packages on 64-bit hosts.Robin Templeton2018-06-01
| | | | | | | | | | | | | | | | | | | | * gnu/packages/rust.scm (rust-bootstrap, rust-1.23): Use nix-system->gnu-triplet to determine the system type. (rust-1.19): Use readelf instead of nm in the atomic-lock-free test. (rust-1.23): Disable the cargo_test_env test. Disable parallel execution of tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add git-annex.Timothy Sample2018-06-01
| | | | | | | | | | | | * gnu/packages/version-control.scm (git-annex): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add ghc-disk-free-space.Timothy Sample2018-06-01
| | | | | | | | | | | | * gnu/packages/haskell.scm (ghc-disk-free-space): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: ghc-psqueues: Allow building with newer versions of QuickCheck.Timothy Sample2018-06-01
| | | | | | | | | | | | | | * gnu/packages/haskell.scm (ghc-psqueues)[arguments]: Add configure flag to allow newer versions of QuickCheck. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add ghc-safesemaphore.Timothy Sample2018-06-01
| | | | | | | | | | | | * gnu/packages/haskell.scm (ghc-safesemaphore): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add ghc-esqueleto.Timothy Sample2018-06-01
| | | | | | | | | | | | * gnu/packages/haskell.scm (ghc-esqueleto): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add ghc-ifelse.Timothy Sample2018-06-01
| | | | | | | | | | | | * gnu/packages/haskell.scm (ghc-ifelse): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add ghc-feed.Timothy Sample2018-06-01
| | | | | | | | | | | | * gnu/packages/haskell.scm (ghc-feed): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add ghc-bloomfilter.Timothy Sample2018-06-01
| | | | | | | | | | | | * gnu/package/haskell.scm (ghc-bloomfilter): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * services: Add hpcguix-web.Rouby Pierre-Antoine2018-06-01
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/service/web.scm (<hpcguix-web-configuration>): New record-type. (%hpcguix-web-accounts): New variable. (%hpcguix-web-activation,hpcguix-web-shepherd-service, hpcguix-web-service-type): New procedures. * gnu/tests/web.scm (run-hpcguix-web-server-test): New procedure. (%hpcguix-web-specs, %hpcguix-web-os, %test-hpcguix-web): New variable. * doc/guix.texi (Web Services): Add 'hpcguix-web'. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add hpcguix-web.Rouby Pierre-Antoine2018-06-01
| | | | | | | | | | | | * gnu/package/web.scm (hpcguix-web): New variable. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
| * marionette: Add 'wait-for-tcp-port'.Ludovic Courtès2018-06-01
| | | | | | | | | | | | * gnu/build/marionette.scm (wait-for-tcp-port): New procedure. * gnu/tests/dict.scm (run-dicod-test)["connect inside"]: Use it instead of the inline loop.
| * gnu: emacs-w3m: Update and allow builds with Emacs 26.Ludovic Courtès2018-06-01
| | | | | | | | | | | | | | | | | | * gnu/packages/emacs.scm (emacs-w3m)[source]: Grab the source from github.com. [native-inputs]: Add TEXINFO. [arguments]: Add 'support-emacs!' phase. In 'patch-exec-paths' phase, make w3m.el and w3m-image.el writable. Remove substitution for 'w3m-image-viewer', which no longer exists.
| * gnu: sddm: Fix CMake build.Stefan Stefanović2018-06-01
| | | | | | | | | | | | | | | | * gnu/packages/display-managers.scm (sddm): Fix CMake build. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch: New file. Signed-off-by: Rutger Helling <rhelling@mykolab.com>
| * scripts: system: Sort profile generations in reverse order.Mathieu Othacehe2018-06-01
| | | | | | | | | | | | * guix/scripts/system.scm (profile-boot-parameters): Reverse generation-numbers list. This allows old generations to be listed from most recent to oldest in bootloaders configuration files.
| * gnu: prosody: Update to 0.10.2 [fixes CVE-2018-10847].Leo Famulari2018-05-31
| | | | | | | | * gnu/packages/messaging.scm (prosody): Update to 0.10.2.
| * gnu: Add emacs-zotxt.Konrad Hinsen2018-05-31
| | | | | | | | | | | | * gnu/packages/emacs.scm (emacs-zotxt): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add emacs-org-caldav.Konrad Hinsen2018-05-31
| | | | | | | | | | | | * gnu/packages/emacs.scm (emacs-org-caldav): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add python-bigfloat.Konrad Hinsen2018-05-31
| | | | | | | | | | | | | | * gnu/packages/python.scm (python-bigfloat, python2-bigfloat): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: bear: Fix python path.Fis Trivial2018-05-31
| | | | | | | | | | | | | | * gnu/packages/build-tools.scm (bear) [inputs]: Add python-wrapper. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * records: Make a couple of procedures available at expansion time.Ludovic Courtès2018-05-31
| | | | | | | | | | * guix/records.scm (current-abi-identifier, abi-check): Wrap in 'eval-when'.
| * system: 'read-boot-parameters' provides a more meaningful warning.Ludovic Courtès2018-05-31
| | | | | | | | | | | | | | 'system' here was bound to Guile's 'system' procedure. * gnu/system.scm (read-boot-parameters): Fix argument for fallback warning.
| * file-systems: Always wait for devices to show up.Ludovic Courtès2018-05-31
| | | | | | | | | | | | | | | | | | | | Previously, 'canonicalize-device-spec' would wait for devices when they were specified as a label or UUID, but would not wait when the user passed a "/dev" file name directly. This could cause problems when the /dev node takes a while to show up. * gnu/build/file-systems.scm (canonicalize-device-spec): Add 'resolve' call in the 'string?' case.
| * self: Reduce the set of dependencies.Ludovic Courtès2018-05-31
| | | | | | | | | | | | | | | | By mistake we were adding more dependencies than needed to the Scheme derivations. * guix/self.scm (compiled-guix)[dependencies]: Use 'package-transitive-propagated-inputs', not 'package-transitive-inputs'.
* | build-system/r: Use invoke.Ricardo Wurmus2018-05-31
| | | | | | | | | | | | * guix/build/r-build-system.scm (invoke-r): Use invoke. (pipe-to-r): Raise invoke-error on non-zero return value. (check): Unconditionally return #t.
* | Merge branch 'master' into core-updatesRicardo Wurmus2018-05-31
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| * gnu: r-servr: Update to 0.10.Ricardo Wurmus2018-05-31
| | | | | | | | | | * gnu/packages/web.scm (r-servr): Update to 0.10. [native-inputs]: Remove r-rcpp.
| * gnu: r-seurat: Update to 2.3.1.Ricardo Wurmus2018-05-31
| | | | | | | | | | * gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.1. [propagated-inputs]: Remove r-gridextra; add r-reticulate.
| * gnu: r-shiny: Update to 1.1.0.Ricardo Wurmus2018-05-31
| | | | | | | | | | | | * gnu/packages/web.scm (r-shiny): Update to 1.1.0. [source]: Fetch from git. [propagated-inputs]: Add r-crayon.
| * gnu: r-rjson: Update to 0.2.19.Ricardo Wurmus2018-05-31
| | | | | | | | * gnu/packages/web.scm (r-rjson): Update to 0.2.19.
| * gnu: r-htmltable: Update to 1.12.Ricardo Wurmus2018-05-31
| | | | | | | | * gnu/packages/web.scm (r-htmltable): Update to 1.12.
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