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* doc: Mention .bashrc vs. .bash_profile for 'guix environment'.Ludovic Courtès2015-07-01
| | | | | * doc/guix.texi (Invoking guix environment): Add footnote about .bashrc vs. .bash_profile.
* environment: Improve error reporting for '-l'.Ludovic Courtès2015-07-01
| | | | | | | | | | | This fixes two problems: 1. Load errors would print an ugly backtrace. 2. When FILE was an absolute name, 'load' was passed an incorrect file name. * guix/scripts/environment.scm (options/resolve-packages): Use 'load*' instead of 'load'.
* environment: For --ad-hoc, allow users to specify an output.Ludovic Courtès2015-07-01
| | | | | | | | | | | | * guix/scripts/environment.scm (package+propagated-inputs): Add 'output' parameter. Use it in return value. (options/resolve-packages): Use 'append-map' instead of 'map'. For 'load' and 'expression', return all the outputs of the resulting package. For 'package', use 'specification->package+output' instead of 'specification->package'. (guix-environment): Adjust uses of PACKAGES accordingly. * doc/guix.texi (Invoking guix environment): Document it. * tests/guix-environment.sh: Add test for --ad-hoc guile-bootstrap:out.
* environment: Add --system.Ludovic Courtès2015-07-01
| | | | | | | * guix/scripts/environment.scm (show-help, %options): Add -s/--system. (%default-options): Add 'system' pair. (guix-environment): Pass 'system' value from OPTS to 'lower-inputs'. * doc/guix.texi (Invoking guix environment): Document it.
* environment: Add only the specified outputs of the dependencies.Ludovic Courtès2015-07-01
| | | | | | | | | | | | | | | | | | | | Before that, 'guix environment guile' (for instance) would define environment variables that would refer to the "include" output of Bash, the "debug" output of libgc, etc., even though these are not listed as inputs in the recipe of 'guile'. * guix/gexp.scm (lower-inputs): Export. * guix/scripts/environment.scm (evaluate-input-search-paths): Remove 'derivations' parameter; add 'search-paths'. Expect 'inputs' to be a list of tuples. Adjust callers. (create-environment): Remove 'derivations' parameter; add 'search-paths'. (show-search-paths): Likewise. (package+propagated-inputs): New procedure. (packages->transitive-inputs, packages+propagated-inputs): Remove. (build-inputs): Expect INPUTS to be a list of derivation tuples. (guix-environment): Compute INPUTS using 'package+propagated-inputs', 'package->bag', and 'bag-transitive-inputs'. Move 'run-with-store' higher. * tests/guix-environment.sh: Add test with FINDUTILS-BOOT0.
* tests: Add tests for 'guix environment'.Ludovic Courtès2015-07-01
| | | | | * tests/guix-environment.sh: New file. * Makefile.am (SH_TESTS): Add it.
* gnu: powertabeditor: Replace "gcc" with "libiberty".Ricardo Wurmus2015-07-01
| | | | | * gnu/packages/music.scm (powertabeditor)[inputs]: Replace "gcc" with "libiberty".
* gnu: Add Hydrogen.Ricardo Wurmus2015-07-01
| | | | * gnu/packages/music.scm (hydrogen): New variable.
* gnu: linux-libre: Update to 4.1.1.Mark H Weaver2015-07-01
| | | | * gnu/packages/linux.scm (linux-libre): Update to 4.1.1.
* gnu: git: Add inputs for send-email.Eric Bavier2015-06-30
| | | | | | | | | * gnu/packages/version-control.scm (package-transitive-propagated-labels*) (package-propagated-input-refs): New procedures. (git)[inputs]: Add perl-authen-sasl, perl-net-smtp-ssl, and perl-io-socket-ssl. [outputs]: Add send-email output. [arguments]: Add #:modules argument with srfi-1. In 'split phase, wrap git-send-email.
* gnu: Add perl-authen-sasl.Eric Bavier2015-06-30
| | | | * gnu/packages/web.scm (perl-authen-sasl): New variable.
* gnu: Add perl-gssapi.Eric Bavier2015-06-30
| | | | * gnu/packages/web.scm (perl-gssapi): New variable.
* gnu: Add perl-net-smtp-ssl.Eric Bavier2015-06-30
| | | | * gnu/packages/web.scm (perl-net-smtp-ssl): New variable.
* gnu: curl: Disable test that fails on Hydra.Mark H Weaver2015-06-30
| | | | * gnu/packages/curl.scm (arguments): Disable test 1510.
* gnu: curl: Update to 7.43.0.Mark H Weaver2015-06-30
| | | | * gnu/packages/curl.scm (curl): Update to 7.43.0.
* gnu: Add deal.II.Eric Bavier2015-06-29
| | | | | | * gnu/packages/maths.scm (dealii, dealii-openmpi): New variables. * gnu/packages/patches/dealii-p4est-interface.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: Add SLEPc.Eric Bavier2015-06-29
| | | | | * gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi) (slepc-complex-openmpi): New variables.
* gnu: Add arpack-ng-openmpi.Eric Bavier2015-06-29
| | | | * gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
* gnu: petsc: Upgrade to 3.6.0.Eric Bavier2015-06-29
| | | | | | * gnu/packages/maths.scm (petsc): Upgrade to 3.6.0. * gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch. * gnu-system.am (dist_patch_DATA): Remove it.
* gnu: Add MUMPS.Eric Bavier2015-06-29
| | | | | | | * gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi) (mumps-metis-openmpi): New variables. * gnu/packages/patches/mumps-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: Add METIS.Eric Bavier2015-06-29
| | | | * gnu/packages/maths.scm (metis): New variable.
* gnu: Add p4est.Eric Bavier2015-06-29
| | | | * gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
* gnu: Add ScaLAPACK.Eric Bavier2015-06-29
| | | | * gnu/packages/maths.scm (scalapack): New variable.
* gnu: scotch, pt-scotch: Build esmumps libraries.Eric Bavier2015-06-29
| | | | | | | * gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps phase. Install esmumps libraries and headers in 'install phase. (pt-scotch)[arguments]: Build ptesmumps in 'build phase. Add make parallelism.
* gnu: scotch, pt-scotch: Use modify-phases.Eric Bavier2015-06-29
| | | | * gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
* gnu: Update scotch to 6.0.4.Eric Bavier2015-06-29
| | | | | | | | | * gnu/packages/maths.scm (scotch): Update to 6.0.4. [arguments]: Add -fPIC to CFLAGS. * gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a new set of test fixes. * gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: openmpi: Upgrade to 1.8.5.Eric Bavier2015-06-29
| | | | | | * gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5. [native-inputs]: Add perl. [arguments]: Add configure flags for thread support.
* gnu: hwloc: Move numactl to inputs.Eric Bavier2015-06-29
| | | | | | * gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here... [inputs]: ...to here. [arguments]: New 'refine-libnuma' phase.
* gnu: hwloc: Upgrade to 1.10.1.Eric Bavier2015-06-29
| | | | | | | | | * gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch. * gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1. [source]: Use patch. [propagated-inputs]: Remove libpci. [inputs]: Add libpciaccess. * gnu-system.am (dist_patch_DATA): Add patch.
* gnu: python-mccabe: Fix license field.Eric Bavier2015-06-29
| | | | | * gnu/packages/python.scm (python-mccabe)[license]: 'expat' -> 'license:expat'.
* gnu: Add python-flake8.Cyril Roelandt2015-06-30
| | | | * gnu/packages/python.scm (python-flake8, python2-flake8): New variables.
* gnu: Add python-mccabe.Cyril Roelandt2015-06-30
| | | | * gnu/packages/python.scm (python-mccabe, python2-mccabe): New variables.
* gnu: Add python-pyflakes.Cyril Roelandt2015-06-30
| | | | * gnu/packages/python.scm (python-pyflakes, python2-pyflakes): New variables.
* gnu: Add python-pep8.Cyril Roelandt2015-06-30
| | | | * gnu/packages/python.scm (python-pep8, python2-pep8): New variables.
* doc: Add 'guix environment' examples.Ludovic Courtès2015-06-29
| | | | | | | | * doc/environment-gdb.scm: New file. * doc.am (EXTRA_DIST): Add it. * doc/guix.texi (Invoking guix environment): Clarify wording of the first example. Add a --ad-hoc example upfront. Add an example for '-e', and one for '-l'.
* gnu: withershins: Use new "libiberty" package.Ricardo Wurmus2015-06-29
| | | | | * gnu/packages/code.scm (withershins)[inputs]: Replace "gcc" with "libiberty". [arguments]: Simplify "find-libiberty" phase.
* gnu: Add libiberty.Ricardo Wurmus2015-06-29
| | | | * gnu/packages/gcc.scm (make-libiberty, libiberty): New variables.
* gnu: r: Update to 3.2.1.Ricardo Wurmus2015-06-29
| | | | | | * gnu/packages/statistics.scm (r): Update to 3.2.1. * gnu/packages/patches/r-fix-15899.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it.
* gnu: Add Blast+.Ricardo Wurmus2015-06-29
| | | | * gnu/packages/bioinformatics.scm (blast+): New variable.
* gnu: global: Update to 6.5.Ludovic Courtès2015-06-29
| | | | * gnu/packages/code.scm (global): Update to 6.5.
* gnu: help2man: Update to 1.47.1.Ludovic Courtès2015-06-29
| | | | * gnu/packages/man.scm (help2man): Update to 1.47.1.
* gnu: parallel: Update to 20150622.Ludovic Courtès2015-06-29
| | | | * gnu/packages/parallel.scm (parallel): Update to 20150622.
* gnu: screen: Update to 4.3.1.Ludovic Courtès2015-06-29
| | | | * gnu/packages/screen.scm (screen): Update to 4.3.1.
* gnu: texinfo: Add version 6.0.Ludovic Courtès2015-06-29
| | | | * gnu/packages/texinfo.scm (texinfo-6): New variable.
* gnu: gcc-4.8: Update to 4.8.5.Ludovic Courtès2015-06-29
| | | | * gnu/packages/gcc.scm (gcc-4.8): Update to 4.8.5.
* doc: Add quote about running a monadic value.Ludovic Courtès2015-06-29
| | | | | * doc/guix.texi (The Store Monad): Add funny quote about "running" a monadic value.
* gnu: Add plink.Ricardo Wurmus2015-06-29
| | | | | * gnu/packages/bioinformatics.scm (plink): New variable. * gnu/packages/patches/plink-1.07-unclobber-i.patch: New file.
* gnu: synergy: Upgrade to 1.7.3.Eric Bavier2015-06-28
| | | | | | | | | * gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3 [source]: Use github for source download. Add snippet to remove bundled source and binaries. [inputs]: Add openssl. [arguments]: Copy example configuration files to out during 'install phase.
* gnu: Add sfarkxtc.Ricardo Wurmus2015-06-28
| | | | * gnu/packages/compression.scm (sfarkxtc): New variable.
* gnu: Add sfarklib.Ricardo Wurmus2015-06-28
| | | | * gnu/packages/compression.scm (sfarklib): New variable.
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