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* gnu: diffoscope: Update to 113.Vagrant Cascadian2019-03-06
| | | | | | * gnu/packages/package-management (diffoscope): Update to 113. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add multitime.Ricardo Wurmus2019-03-06
| | | | * gnu/packages/benchmark.scm (multitime): New variable.
* gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor).Ricardo Wurmus2019-03-06
| | | | | * gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-mm-eg-db): ...to here.
* gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor).Ricardo Wurmus2019-03-06
| | | | | * gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here.
* gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor).Ricardo Wurmus2019-03-06
| | | | | * gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-dm-eg-db): ...to here.
* gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor).Ricardo Wurmus2019-03-06
| | | | | * gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-ce-eg-db): ...to here.
* gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor).Ricardo Wurmus2019-03-06
| | | | | | | * gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Move from here... * gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): ...to here.
* gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor).Ricardo Wurmus2019-03-06
| | | | | | | * gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3): ...to here.
* gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor).Ricardo Wurmus2019-03-06
| | | | | | * gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here.
* gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor).Ricardo Wurmus2019-03-06
| | | | | | * gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6): ...to here.
* gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor).Ricardo Wurmus2019-03-06
| | | | | | * gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to here.
* gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor).Ricardo Wurmus2019-03-06
| | | | | | * gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9): ...to here.
* gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor).Ricardo Wurmus2019-03-06
| | | | | | * gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): ...to here.
* gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages ↵Ricardo Wurmus2019-03-06
| | | | | | | | | bioconductor). * gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5): ...to here.
* gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor).Ricardo Wurmus2019-03-06
| | | | | | | * gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): Move from here... * gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): ...to here.
* gnu: r-geneplotter: Move to (gnu packages bioconductor).Ricardo Wurmus2019-03-06
| | | | | * gnu/packages/bioinformatics.scm (r-geneplotter): Move from here... * gnu/packages/bioconductor.scm (r-geneplotter): ...to here.
* gnu: Add guile-stis-parser.Ricardo Wurmus2019-03-06
| | | | * gnu/packages/guile-xyz.scm (guile-stis-parser): New variable.
* gnu: r-copynumber: Move to (gnu packages bioconductor).Ricardo Wurmus2019-03-06
| | | | | * gnu/packages/bioinformatics.scm (r-copynumber): Move from here... * gnu/packages/bioconductor.scm (r-copynumber): ...to here.
* gnu: Update copyright headers.Ricardo Wurmus2019-03-06
| | | | | | | This is a follow-up to commit 1fe9a36173335b559c695357bc8d884f1d4b144a. * gnu/packages/bioconductor.scm: Update copyright header to account for moved package.
* gnu: font-gnu-unifont: Update to 12.0.01.Efraim Flashner2019-03-06
| | | | * gnu/packages/fonts.scm (font-gnu-unifont): Update to 12.0.01.
* gnu: cabextract: Don't use NAME in source URI.Tobias Geerinckx-Rice2019-03-06
| | | | * gnu/packages/compression.scm (cabextract)[source]: Hard-code NAME.
* gnu: cabextract: Update to 1.9.1.Tobias Geerinckx-Rice2019-03-06
| | | | * gnu/packages/compression.scm (cabextract): Update to 1.9.1.
* gnu: lcov: Update to 1.14.Tobias Geerinckx-Rice2019-03-06
| | | | * gnu/packages/code.scm (lcov): Update to 1.14.
* gnu: python-mako: Update home page.Marius Bakke2019-03-06
| | | | * gnu/packages/python-xyz.scm (python-mako)[home-page]: Use HTTPS.
* gnu: fuseiso: Fix typo.Marius Bakke2019-03-06
| | | | * gnu/packages/linux.scm (fuseiso)[synopsis]: s/imsages/images.
* gnu: valgrind: Add download mirror.Marius Bakke2019-03-06
| | | | * gnu/packages/valgrind.scm (valgrind)[source](uri): Add mirror.
* gnu: bismark: Update to 0.20.1.Ricardo Wurmus2019-03-06
| | | | | | | | | * gnu/packages/bioinformatics.scm (bismark): Update to 0.20.1. [source]: Remove obsolete snippet. [arguments]: Add build phase "replace-plotly.js" and add requried modules; adjust "install" phase. [inputs]: Add perl-carp and perl-getopt-long. [native-inputs]: Add plotly.js and uglify-js.
* gnu: Add fuseiso.Pierre Neidhardt2019-03-06
| | | | * gnu/packages/linux.scm (fuseiso): New variable.
* gnu: Add r-scde.Ricardo Wurmus2019-03-06
| | | | * gnu/packages/bioinformatics.scm (r-scde): New variable.
* gnu: Add bowtie1.Ricardo Wurmus2019-03-06
| | | | * gnu/packages/bioinformatics.scm (bowtie1): New variable.
* gnu: octave, octave-cli: Update to 5.1.0.Kei Kebreau2019-03-06
| | | | * gnu/packages/maths.scm (octave, octave-cli): Update to 5.1.0.
* gnu: crawl, crawl-tiles: Update to 0.23.1.Kei Kebreau2019-03-06
| | | | | | | * gnu/packages/games.scm (crawl, crawl-tiles): Update to 0.23.1. [native-inputs]: Add python and python-pyyaml. [arguments]: Add 'patch-python' phase, modify the 'check' phase and move the 'check' phase back after the 'build' phase.
* gnu: perl-czplib: Fix installation directory.Ricardo Wurmus2019-03-06
| | | | * gnu/packages/perl.scm (perl-czplib)[arguments]: Fix installation directory.
* gnu: Add guile-studio.Ricardo Wurmus2019-03-06
| | | | * gnu/packages/guile-xyz.scm (guile-studio): New variable.
* gnu: Add genrich.Ricardo Wurmus2019-03-06
| | | | * gnu/packages/bioinformatics.scm (genrich): New variable.
* gnu: r-dnacopy: Remove duplicate definition.Ricardo Wurmus2019-03-06
| | | | | | Reported by Christopher Baines <mail@cbaines.net>. * gnu/packages/bioinformatics.scm (r-dnacopy): Remove variable.
* gnu: Add r-org-dr-eg-db.Ricardo Wurmus2019-03-06
| | | | * gnu/packages/bioconductor.scm (r-org-dr-eg-db): New variable.
* gnu: java-eclipse-jdt-core: Update to 3.16.0.Ricardo Wurmus2019-03-06
| | | | * gnu/packages/java.scm (java-eclipse-jdt-core): Update to 3.16.0.
* gnu: java-eclipse-core-resources: Update to 3.13.200.Ricardo Wurmus2019-03-06
| | | | * gnu/packages/java.scm (java-eclipse-core-resources): Update to 3.13.200.
* gnu: java-eclipse-core-runtime: Update to 3.15.100.Ricardo Wurmus2019-03-06
| | | | * gnu/packages/java.scm (java-eclipse-core-runtime): Update to 3.15.100.
* gnu: java-eclipse-equinox-common: Update to 3.10.200.Ricardo Wurmus2019-03-06
| | | | * gnu/packages/java.scm (java-eclipse-equinox-common): Update to 3.10.200.
* gnu: shaderc: Update to 2018.0.Rutger Helling2019-03-06
| | | | * gnu/packages/vulkan.scm (shaderc): Update to 2018.0.
* gnu: spirv-tools: Update to 2019.1.Rutger Helling2019-03-06
| | | | | | * gnu/packages/vulkan.scm (spirv-tools): Update to 2019.1. [arguments]: Add 'fixgcc7 phase. [native-inputs]: Add gcc-7.
* gnu: spirv-headers: Update to commit 8bea0a2.Rutger Helling2019-03-06
| | | | * gnu/packages/vulkan.scm (spirv-headers): Update to commit 8bea0a2.
* gnu: glslang: Update to 7.11.3113.Rutger Helling2019-03-06
| | | | * gnu/packages/vulkan.scm (glslang): Update to 7.11.3113.
* gnu: MPD: Update to 0.21.5.Leo Famulari2019-03-05
| | | | * gnu/packages/mpd.scm (mpd): Update to 0.21.5.
* gnu: FFmpeg: Build with AV1 support.Arne Babenhauserheide2019-03-05
| | | | | | * gnu/packages/video.scm (ffmpeg)[inputs]: Add libaom. [arguments]: Pass '--enable-libaom' to #:configure-flags. (ffmpeg-3.4)[inputs, arguments]: Filter out libaom.
* gnu: Add libaom.Arne Babenhauserheide2019-03-05
| | | | | | * gnu/packages/video.scm (libaom): New variable. Co-authored-by: Leo Famulari <leo@famulari.name>
* gnu: you-get: Update to 0.4.1256.Tobias Geerinckx-Rice2019-03-06
| | | | * gnu/packages/video.scm (you-get): Update to 0.4.1256.
* gnu: youtube-dl: Update to 2019.03.01.Tobias Geerinckx-Rice2019-03-06
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2019.03.01.
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