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* gnu: Add python-miniboa.Christopher Baines2019-01-13
| | | | | | python2-miniboa is required for the linkchecker testsuite. * gnu/packages/python.scm (python-miniboa, python2-miniboa): New variable.
* gnu: python-pillow: Update to 5.4.1.Christopher Baines2019-01-13
| | | | | | | | I'm looking at this, as this release fixes an issue with the Django testsuite: https://github.com/python-pillow/Pillow/pull/3525 * gnu/packages/python.scm (python-pillow): Update to 5.4.1.
* gnu: r-biocgenerics: Move to bioconductor.Ricardo Wurmus2019-01-13
| | | | | * gnu/packages/bioinformatics.scm (r-biocgenerics): Move from here... * gnu/packages/bioconductor.scm (r-biocgenerics): ...to here.
* gnu: r-annotate: Move to bioconductor.Ricardo Wurmus2019-01-13
| | | | | * gnu/packages/bioinformatics.scm (r-annotate): Move from here... * gnu/packages/bioconductor.scm (r-annotate): ...to here.
* gnu: r-vegan: Move from bioinformatics to cran.Ricardo Wurmus2019-01-13
| | | | | * gnu/packages/bioinformatics.scm (r-vegan): Move from here... * gnu/packages/cran.scm (r-vegan): ...to here.
* gnu: conda: Use 'invoke'.Efraim Flashner2019-01-13
| | | | * gnu/packages/package-management.scm (conda)[arguments]: Use 'invoke'.
* gnu: python-conda: All phases return #t.Efraim Flashner2019-01-13
| | | | | * gnu/packages/package-management.scm (python-conda)[arguments]: Use 'invoke'.
* gnu: python-conda: Fix test suite.Efraim Flashner2019-01-13
| | | | | * gnu/packages/package-management.scm (python-conda)[native-inputs]: Add python-cytoolz.
* gnu: Add r-raster.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/cran.scm (r-raster): New variable.
* gnu: r-ggformula: Update to 0.9.1.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/cran.scm (r-ggformula): Update to 0.9.1.
* gnu: r-tibble: Update to 2.0.1.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/statistics.scm (r-tibble): Update to 2.0.1.
* gnu: r-psych: Update to 1.8.12.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/cran.scm (r-psych): Update to 1.8.12.
* gnu: bitshuffle: Fix build on armhf-linux.Efraim Flashner2019-01-13
| | | | | * gnu/packages/compression.scm (bitshuffle)[arguments]: Add custom phase to only use NEON on aarch64.
* gnu: wine-staging: Update to 4.0-rc6.Rutger Helling2019-01-13
| | | | | * gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc6. * gnu/packages/wine.scm (wine-staging): Update to 4.0-rc6.
* gnu: Sort package module references in (gnu packages graphviz).Ricardo Wurmus2019-01-13
| | | | | * gnu/packages/graphviz.scm: Sort package module references; delete duplicates.
* gnu: Add python-pygraphviz.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/graphviz.scm (python-pygraphviz): New variable.
* gnu: Add python-doctest-ignore-unicode.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/python.scm (python-doctest-ignore-unicode): New variable.
* gnu: Add graphviz-2.38.Ricardo Wurmus2019-01-13
| | | | * gnu/packages/graphviz.scm (graphviz-2.38): New variable.
* gnu: sudo: Update to 1.8.27.Marius Bakke2019-01-13
| | | | * gnu/packages/admin.scm (sudo): Update to 1.8.27.
* gnu: libassuan: Update to 2.5.2.Marius Bakke2019-01-13
| | | | * gnu/packages/gnupg.scm (libassuan): Update to 2.5.2.
* gnu: libgxps: Update to 0.3.1.Marius Bakke2019-01-13
| | | | * gnu/packages/gnome.scm (libgxps): Update to 0.3.1.
* gnu: libqmi: Update to 1.22.0.Marius Bakke2019-01-13
| | | | * gnu/packages/freedesktop.scm (libqmi): Update to 1.22.0.
* gnu: libmbim: Update to 1.18.0.Marius Bakke2019-01-13
| | | | * gnu/packages/freedesktop.scm (libmbim): Update to 1.18.0.
* gnu: libsodium: Update to 1.0.17.Marius Bakke2019-01-13
| | | | * gnu/packages/crypto.scm (libsodium): Update to 1.0.17.
* gnu: exempi: Update to 2.5.0.Marius Bakke2019-01-13
| | | | * gnu/packages/freedesktop.scm (exempi): Update to 2.5.0.
* gnu: seabios: Update to 1.12.0.Marius Bakke2019-01-13
| | | | * gnu/packages/firmware.scm (seabios): Update to 1.12.0.
* gnu: httpd: Update to 2.4.37.Marius Bakke2019-01-13
| | | | * gnu/packages/web.scm (httpd): Update to 2.4.37.
* gnu: nasm: Update license.Marius Bakke2019-01-13
| | | | * gnu/packages/assembly.scm (nasm)[license]: Change to BSD-2.
* gnu: nasm: Update home page.Marius Bakke2019-01-13
| | | | * gnu/packages/assembly.scm (nasm)[home-page]: Use HTTPS.
* gnu: libgphoto2: Update to 2.5.22.Marius Bakke2019-01-13
| | | | * gnu/packages/photo.scm (libgphoto2): Update to 2.5.22.
* gnu: re2: Update to 2019-01-01.Marius Bakke2019-01-13
| | | | * gnu/packages/regex.scm (re2): Update to 2019-01-01.
* gnu: libsecret: Update to 0.18.7.Marius Bakke2019-01-13
| | | | | * gnu/packages/gnome.scm (libsecret): Update to 0.18.7. [native-inputs]: Remove INTLTOOL. Add GETTEXT-MINIMAL.
* gnu: fluidsynth: Update to 2.0.3.Marius Bakke2019-01-13
| | | | * gnu/packages/audio.scm (fluidsynth): Update to 2.0.3.
* gnu: rofi: Update to 1.5.2.Marius Bakke2019-01-13
| | | | * gnu/packages/xdisorg.scm (rofi): Update to 1.5.2.
* gnu: xscreensaver: Update to 5.42.Marius Bakke2019-01-13
| | | | | * gnu/packages/xdisorg.scm (xscreensaver): Update to 5.42. [arguments]: Add "CFLAGS=-std=c99" to #:make-flags.
* gnu: libcmis: Update to 0.5.2.Marius Bakke2019-01-13
| | | | | | * gnu/packages/libreoffice.scm (libcmis): Update to 0.5.2. [source](uri): Use XZ-compressed tarball. [arguments]: Remove #:phases. Don't pass "--disable-werror" in #:configure-flags.
* gnu: http-parser: Update to 2.9.0.Marius Bakke2019-01-13
| | | | * gnu/packages/web.scm (http-parser): Update to 2.9.0.
* gnu: http-parser: Download from git.Marius Bakke2019-01-13
| | | | * gnu/packages/web.scm (http-parser)[source]: Change to GIT-FETCH.
* gnu: libetonyek: Adjust inputs.Marius Bakke2019-01-13
| | | | | | | * gnu/packages/libreoffice.scm (libetonyek)[native-inputs]: Remove LIBLANGTAG. Move GLM and MDDS to ... [inputs]: ... here. [propagated-inputs]: Add LIBLANGTAG and ZLIB.
* gnu: libetonyek: Update to 0.1.9.Marius Bakke2019-01-13
| | | | | * gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.9. [arguments]: Remove #:phases.
* gnu: libcdr: Update to 0.1.5.Marius Bakke2019-01-13
| | | | | | * gnu/packages/libreoffice.scm (libcdr): Update to 0.1.5. [source](uri): Download over HTTPS. [arguments]: Remove.
* gnu: tintin++: Update to 2.01.5.Kei Kebreau2019-01-12
| | | | * gnu/packages/games.scm (tintin++): Update to 2.01.5.
* gnu: r-ruvseq: Update to 1.16.1.Ricardo Wurmus2019-01-12
| | | | * gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.1.
* gnu: r-inspect: Update to 1.12.1.Ricardo Wurmus2019-01-12
| | | | | | * gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.1. [propagated-inputs]: Add r-deseq2, r-plgem, r-shiny, r-summarizedexperiment, and r-txdb-mmusculus-ucsc-mm9-knowngene.
* gnu: Add r-txdb-mmusculus-ucsc-mm9-knowngene.Ricardo Wurmus2019-01-12
| | | | | * gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene): New variable.
* gnu: Add r-plgem.Ricardo Wurmus2019-01-12
| | | | * gnu/packages/bioconductor.scm (r-plgem): New variable.
* gnu: r-rots: Update to 1.10.1.Ricardo Wurmus2019-01-12
| | | | * gnu/packages/bioconductor.scm (r-rots): Update to 1.10.1.
* gnu: r-glimma: Update to 1.10.1.Ricardo Wurmus2019-01-12
| | | | * gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.1.
* gnu: r-goseq: Update to 1.34.1.Ricardo Wurmus2019-01-12
| | | | * gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.1.
* gnu: r-chippeakanno: Update to 3.16.1.Ricardo Wurmus2019-01-12
| | | | * gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.1.
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