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* gnu: python-cheetah: Update to 3.1.0.Marius Bakke2018-11-24
| | | | | | | | * gnu/packages/python.scm (python2-cheetah): Rename to ... (python-cheetah): ... this. Update to 3.1.0. [arguments]: Add custom 'check' phase. [propagated-inputs]: Change PYTHON2-MARKDOWN to PYTHON-MARKDOWN. (python2-cheetah): Rewrite in terms of PACKAGE-WITH-PYTHON2.
* gnu: python2-cheetah: Update home page.Marius Bakke2018-11-24
| | | | * gnu/packages/python.scm (python-cheetah)[home-page]: Update to current.
* gnu: rust: Don't depend on 'git'.Marius Bakke2018-11-24
| | | | | | * gnu/packages/rust.scm (rust-1.19)[inputs]: Remove GIT. (rust-1.20)[arguments]: Disable Cargo tests that require git. (rust-1.26)[arguments]: Likewise.
* gnu: mariadb: Update to 10.1.37 [security fixes].Marius Bakke2018-11-24
| | | | | | | | This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156, and CVE-2018-3251. See <https://mariadb.com/kb/en/library/mariadb-10137-release-notes/> for details. * gnu/packages/databases.scm (mariadb): Update to 10.1.37.
* Merge branch 'master' into core-updatesMarius Bakke2018-11-24
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| * gnu: libraw: Update to 0.19.1.Marius Bakke2018-11-24
| | | | | | | | * gnu/packages/photo.scm (libraw): Update to 0.19.1.
| * gnu: libtorrent-rasterbar: Update to 1.1.11.Marius Bakke2018-11-24
| | | | | | | | * gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.11.
| * gnu: Add deluge.Nam Nguyen2018-11-24
| | | | | | | | | | | | | | * gnu/packages/bittorrent.scm (deluge): New variable. Co-authored-by: Mike Rosset <mike.rosset@gmail.com> Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: libtorrent-rasterbar: Compile Python bindings in C++11 mode.Nam Nguyen2018-11-24
| | | | | | | | | | | | | | * gnu/packages/bittorrent.scm (libtorrent-rasterbar)[arguments]: Add phase to substitute setup.py. Co-authored-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: Add python-service-identity.Nam Nguyen2018-11-24
| | | | | | | | | | | | | | * gnu/packages/python-crypto.scm (python-service-identity, python2-service-identity): New variables. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: Add emacs-matrix-client.Nicolas Goaziou2018-11-23
| | | | | | | | * gnu/packages/emacs.scm (emacs-matrix-client): New variable.
| * gnu: Add emacs-a.Nicolas Goaziou2018-11-23
| | | | | | | | * gnu/packages/emacs.scm (emacs-a): New variable.
| * gnu: Add emacs-tracking.Nicolas Goaziou2018-11-23
| | | | | | | | * gnu/packages/emacs.scm (emacs-tracking): New variable.
| * gnu: Add emacs-ov.Nicolas Goaziou2018-11-23
| | | | | | | | * gnu/packages/emacs.scm (emacs-ov): New variable.
| * gnu: python-slepc4py: Update to 3.10.0.Paul Garlick2018-11-23
| | | | | | | | | | | | * gnu/packages/maths.scm (python-slepc4py): Update to 3.10.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: python-petsc4py: Update to 3.10.0.Paul Garlick2018-11-23
| | | | | | | | | | | | * gnu/packages/maths.scm (python-petsc4py): Update to 3.10.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: slepc: Update to 3.10.1.Paul Garlick2018-11-23
| | | | | | | | | | | | * gnu/packages/maths.scm (slepc): Update to 3.10.1. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: petsc: Update to 3.10.2Paul Garlick2018-11-23
| | | | | | | | | | | | * gnu/packages/maths.scm (petsc): Update to 3.10.2. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: python-ilinkedlist: Update to 0.4.0.Luther Thompson2018-11-23
| | | | | | | | | | | | * gnu/packages/python.scm (python-ilinkedlist): Update to 0.4.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * build: Binary tarball now populates the "current-guix" profile.Ludovic Courtès2018-11-23
| | | | | | | | | | | | | | | | | | | | | | | | * Makefile.am (guix-binary.%.tar.xz): Pass '--profile-name=current-guix'. Remove glibc and glibc-utf8-locales. * doc/guix.texi (Binary Installation): Update accordingly. * etc/guix-install.sh * etc/guix-install.sh (sys_create_store, sys_enable_guix_daemon) (sys_authorize_build_farms): Likewise. * etc/guix-publish.conf.in, etc/guix-publish.service.in, etc/guix-daemon.conf.in, etc/guix-daemon.service.in: Update file names accordingly.
| * pack: Add '--profile-name'.Ludovic Courtès2018-11-23
| | | | | | | | | | | | | | | | | | | | | | | | * guix/scripts/pack.scm (self-contained-tarball): Add #:profile-name and honor it. (squashfs-image, docker-image): Add #:profile-name. (%default-options): Add 'profile-name'. (%options, show-help): Add "--profile-name". (guix-pack): Honor it. * tests/guix-pack-localstatedir.sh: New file. * Makefile.am (SH_TESTS): Add it. * doc/guix.texi (Invoking guix pack): Document "--profile-name".
| * Update NEWS.Ludovic Courtès2018-11-23
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| * status: Display 'build-remote' events.Ludovic Courtès2018-11-23
| | | | | | | | * guix/status.scm (print-build-event): Add clause for 'build-remote'.
| * Update Guile-SQLite3 URL everywhere.Ludovic Courtès2018-11-23
| | | | | | | | | | | | | | * README: Update Guile-SQLite3 URL. * doc/guix.texi (Requirements): Likewise. * guix/store/database.scm (sqlite-exec): Likewise. * m4/guix.m4 (GUIX_CHECK_GUILE_SQLITE3): Likewise.
| * gnu: emacs-picpocket: Update to 40.Alex Vong2018-11-23
| | | | | | | | | | | | | | Fix version string as well: <https://lists.gnu.org/archive/html/guix-devel/2018-11/msg00286.html>. * gnu/packages/emacs.scm (emacs-picpocket): Update to 40.
| * gnu: xpra: Update to 2.4.2.Rutger Helling2018-11-23
| | | | | | | | * gnu/packages/xorg.scm (xpra): Update to 2.4.2.
| * gnu: Add u-boot-pinebook.Vagrant Cascadian2018-11-22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/u-boot-pinebook-a64-update-dts.patch: New file. * gnu/packages/patches/u-boot-pinebook-syscon-node.patch: New file. * gnu/packages/patches/u-boot-pinebook-mmc-calibration.patch: New file. * gnu/packages/patches/u-boot-pinebook-video-bridge.patch: New file. * gnu/packages/patches/u-boot-pinebook-r_i2c-controller.patch: New file. * gnu/packages/patches/u-boot-pinebook-dts.patch: New file. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/bootloaders.scm (u-boot-pinebook): New exported variable. * gnu/bootloader/u-boot.scm (u-boot-pinebook-bootloader): New exported variable. * gnu/system/install.scm (pinebook-installation-os): New exported variable.
| * gnu: ccl: Fix missing command line argument support in wrapper.Pierre Neidhardt2018-11-22
| | | | | | | | * gnu/packages/lisp.scm (ccl): Fix missing command line argument support in wrapper.
| * describe: Add recutils format.Oleg Pykhalov2018-11-22
| | | | | | | | | | | | | | * guix/scripts/describe.scm (channel->recutils): New procedure. (display-checkout-info, display-profile-info): Use this. (%options): Add 'recutils' option. * doc/guix.texi (Invoking guix describe): Document this.
| * describe: Add json format.Oleg Pykhalov2018-11-22
| | | | | | | | | | | | | | * guix/scripts/describe.scm (channel->json): New procedure. (display-checkout-info, display-profile-info): Use this. (%options): Add 'json' option. * doc/guix.texi (Invoking guix describe): Document this.
| * describe: Use a procedure to format output.Oleg Pykhalov2018-11-22
| | | | | | | | | | * guix/scripts/describe.scm (channel->sexp): New procedure. (display-checkout-info, display-profile-info): Use this.
| * gnu: gajim: Rename wrap-program phases.Arun Isaac2018-11-22
| | | | | | | | | | * gnu/packages/messaging.scm (gajim)[arguments]: Rename wrap-program phases to wrap-gi-typelib-path and wrap-gsettings-schema-dir.
| * gnu: supercollider: Update to 3.9.3.Nicolas Goaziou2018-11-22
| | | | | | | | * gnu/packages/audio.scm (supercollider): Update to 3.9.3.
| * gnu: giac-xcas: Add a "doc" outputNicolas Goaziou2018-11-22
| | | | | | | | | | * gnu/packages/algebra.scm (giac-xcas): Add "doc" output. [arguments]: Add phase to install documentation in the appropriate directory.
| * gnu: giac-xcas: Update to 1.5.0-19.Nicolas Goaziou2018-11-22
| | | | | | | | * gnu/packages/algebra.scm (giac-xcas): Update to 1.5.0-19.
| * gnu: ccl: Properly include x86-headers and remove missing "contrib" folder.Pierre Neidhardt2018-11-22
| | | | | | | | | | * gnu/packages/lisp.scm (ccl): Include x86-headers and remove missing "contrib" folder. [home-page]: Use HTTPS.
* | gnu: pt-scotch, pt-scotch32: Add Open MPI setup phase.Ludovic Courtès2018-11-23
| | | | | | | | | | | | * gnu/packages/maths.scm (pt-scotch)[arguments]: Use 'invoke' instead of 'system*'. Add 'mpi-setup' phase. (pt-scotch32)[arguments]: Likewise.
* | gnu: pigx-scrnaseq: Use latest snakemake.Ricardo Wurmus2018-11-23
| | | | | | | | | | * gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-4 with snakemake.
* | gnu: pigx-bsseq: Use latest snakemake.Ricardo Wurmus2018-11-23
| | | | | | | | | | * gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace snakemake-4 with snakemake.
* | gnu: pigx-chipseq: Use latest snakemake.Ricardo Wurmus2018-11-23
| | | | | | | | | | * gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace snakemake-4 with snakemake.
* | gnu: python-gevent: Update to 1.3.7.Ricardo Wurmus2018-11-23
| | | | | | | | | | | | * gnu/packages/python.scm (python-gevent): Update to 1.3.7. [arguments]: Find headers for greenlet in phase "do-not-use-bundled-sources". [propagated-inputs]: Add python-objgraph.
* | gnu: Add python-objgraph.Ricardo Wurmus2018-11-23
| | | | | | | | * gnu/packages/python.scm (python-objgraph): New variable.
* | gnu: python-loompy: Remove python-typing.Ricardo Wurmus2018-11-23
| | | | | | | | | | * gnu/packages/bioinformatics.scm (python-loompy)[propagated-inputs]: Remove python-typing.
* | gnu: podofo: Add patch to fix build.Ricardo Wurmus2018-11-22
| | | | | | | | | | | | * gnu/packages/patches/podofo-cmake-3.12.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (podofo)[source]: Add patch.
* | gnu: jalv: Build with python-2.Efraim Flashner2018-11-22
| | | | | | | | * gnu/packages/audio.scm (jalv)[arguments]: Build with python-2.
* | gnu: python-scikit-learn: Update to 0.20.1.Marius Bakke2018-11-22
| | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.1. [source](patches): Remove. [arguments]: Skip network tests with pytest instead of deleting files. Make sure $HOME is writable. (python2-scikit-learn): Rewrite in terms of PACKAGE-WITH-PYTHON2.
* | Merge branch 'master' into core-updatesMarius Bakke2018-11-22
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| * linux-initrd: 'expression->initrd' returns the complete file name.Ludovic Courtès2018-11-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Previously 'expression->initrd' would return the directory that contains the 'initrd' file; now it returns the complete file name for that file. * gnu/system/linux-initrd.scm (expression->initrd)[builder]: Change output file name to "initrd.cpio.gz". Tail-call 'file-append' to return the complete file name. * gnu/system.scm (operating-system-initrd-file): Remove 'file-append' call. * gnu/build/linux-initrd.scm (write-cpio-archive): Check whether OUTPUT already has the ".gz" suffix; rename if before invoking GZIP if it does, and otherwise after. * gnu/system/vm.scm (expression->derivation-in-linux-vm)[builder]: Do not append "/initrd" to #$initrd.
| * guix system: Fix 'init' again.Ludovic Courtès2018-11-21
| | | | | | | | | | | | | | | | | | Fixes a regression introduced in 52ee4479ef26826a53b9929cd00ca7738be687b1, whereby 'install' would now be passed a procedure instead of a lowerable object. * guix/scripts/system.scm (perform-action): Pass BOOTLOADER-SCRIPT as the #:bootloader-installer argument of 'install'.
| * gnu: mbedtls-apache: Update to 2.14.0.Marius Bakke2018-11-21
| | | | | | | | * gnu/packages/tls.scm (mbedtls-apache): Update to 2.14.0.
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