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* doc: Drop documentation of deprecated procedures.Andreas Enge2016-02-16
| | | | | * doc/guix.texi ("build systems"): Drop documentation of BUILD-EXPRESSION->DERIVATION.
* doc: Use modify-phases syntax in example.Andreas Enge2016-02-16
| | | | | * doc/guix.texi ("build systems"): Use modify-phases syntax instead of alist-delete in example.
* doc: Move paragraphs in description of guix archive.Andreas Enge2016-02-16
| | | | | * doc/guix.texi ("invoking guix archive"): Move paragraph describing basic invocation from the end to the beginning of the section.
* gnu: hydrogen: Update to 0.9.6.1.Efraim Flashner2016-02-16
| | | | | | | | * gnu/packages/music.scm (hydrogen): Update to 0.9.6.1. [build-system]: Switch to cmake-build-system. [arguments]: Enable configure and tests, remove custom phases. [native-inputs]: Remove python-2, scons. Add cppunit. [inputs]: Add libarchive, lrdf.
* gnu: htseq: Add PySam to inputs.Ricardo Wurmus2016-02-16
| | | | * gnu/packages/bioinformatics.scm (htseq)[inputs]: Add "python2-pysam".
* gnu: Add StringTie.Ricardo Wurmus2016-02-16
| | | | * gnu/packages/bioinformatics.scm (stringtie): New variable.
* gnu: Add Augeas.Ricardo Wurmus2016-02-16
| | | | | * gnu/packages/augeas.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu: gpsbabel: Use 'modify-phases'.Efraim Flashner2016-02-16
| | | | * gnu/packages/gps.scm (gpsbabel)[arguments]: Use 'modify-phases'.
* gnu: gpsbabel: Update to 1.5.2.Efraim Flashner2016-02-16
| | | | | * gnu/packages/gps.scm (gpsbabel): Update to 1.5.2. [inputs]: Remove qt-4, add qt.
* gnu: librecad: Use 'modify-phases'.Efraim Flashner2016-02-16
| | | | * gnu/packages/engineering.scm (librecad)[arguments]: Use 'modify-phases'.
* gnu: librecad: Update to 2.0.9.Efraim Flashner2016-02-16
| | | | | * gnu/packages/engineering.scm (librecad): Update to 2.0.9. [inputs]: Use qt instead of qt-4.
* gnu: iftop: Fix license.Leo Famulari2016-02-15
| | | | * gnu/packages/admin.scm (iftop)[license]: Correct 'gpl3' to 'gpl2+'.
* gnu: shntool: Fix license.Leo Famulari2016-02-15
| | | | | * gnu/packages/audio.scm (shntool)[license]: Correct 'gpl3+' to 'gpl2+' and add 'x11'.
* gnu: pioneers: Fix license.Leo Famulari2016-02-15
| | | | * gnu/packages/games.scm (pioneers)[license]: Correct 'gpl3+' to 'gpl2+'.
* gnu: Add pioneers.Rodger Fox2016-02-15
| | | | | | * gnu/packages/games.scm (pioneers): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: vdirsyncer: Update to 0.9.0.Leo Famulari2016-02-15
| | | | * gnu/packages/dav.scm (vdirsyncer): Update to 0.9.0.
* gnu: python-click-log: Update to 0.1.3.Leo Famulari2016-02-15
| | | | * gnu/packages/python.scm (python-click-log): Update to 0.1.3.
* gnu: python-atomicwrites: Update to 0.1.9.Leo Famulari2016-02-15
| | | | * gnu/packages/python.scm (python-atomicwrites): Update to 0.1.9.
* gnu: python-lxml: Update to 3.5.0.Leo Famulari2016-02-15
| | | | | * gnu/packages/python.scm (python-lxml, python2-lxml): Update to 3.5.0. [source]: Use pypi-uri.
* gnu: redshift: Update to 1.11.Tobias Geerinckx-Rice2016-02-15
| | | | * gnu/packages/xdisorg.scm (redshift): Update to 1.11.
* gnu: python-sqlalchemy: Update to 1.0.12.Christopher Allan Webber2016-02-15
| | | | * gnu/packages/python.scm (python-sqlalchemy): Update to 1.0.12.
* gnu: Add slurm.Pjotr Prins2016-02-15
| | | | | | | | | | * gnu/packages/parallel.scm (slurm): New variable. * gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/parallel.scm: Introduce license name space. Co-authored-by: Andreas Enge <andreas@enge.fr>
* gnu: prodigal: Update to 2.6.3.Ben Woodcroft2016-02-16
| | | | * gnu/packages/bioinformatics.scm (prodigal): Update to 2.6.3.
* gnu: polkit-qt: Build with qt-5.Efraim Flashner2016-02-15
| | | | *gnu/packages/polkit.scm (polkit-qt)[propagated-inputs]: Use qt.
* gnu: bazaar: Update to 2.7.0.Efraim Flashner2016-02-15
| | | | * gnu/packages/version-control.scm (bazaar): Update to 2.7.0.
* gnu: r-annotationdbi: Update to 1.32.3.Ricardo Wurmus2016-02-15
| | | | * gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.32.3.
* gnu: Add audit.Ricardo Wurmus2016-02-15
| | | | * gnu/packages/admin.scm (audit): New variable.
* gnu: vera: Update to 1.23.Efraim Flashner2016-02-15
| | | | * gnu/packages/dictionaries.scm (vera): Update to 1.23.
* gnu: nano: Update to 2.5.2.Efraim Flashner2016-02-15
| | | | * gnu/packages/nano.scm (nano): Update to 2.5.2.
* gnu: bitcoin-core: Update to 0.11.2.Efraim Flashner2016-02-15
| | | | | * gnu/packages/finance.scm (bitcoin-core): Update to 0.11.2. [native-inputs]: Use python-2 instead of python-wrapper.
* gnu: owncloud-client: Update to 2.1.1.Efraim Flashner2016-02-15
| | | | * gnu/packages/owncloud.scm (owncloud-client): Update to 2.1.1.
* gnu: vsearch: Update to 1.10.0.Ben Woodcroft2016-02-15
| | | | | * gnu/packages/bioinformatics.scm (vsearch): Update to 1.10.0. [origin]: Adapt to changes in bundling of cityhash.
* gnu: cityhash: Install citycrc.h.Ben Woodcroft2016-02-15
| | | | | * gnu/packages/textutils.scm (cityhash)[arguments]: Install citycrc.h. [version]: Use standardised format, increment to 1.1-2.
* gnu: graphite2: Update to 1.3.5. Update home-page and source URI.Mark H Weaver2016-02-15
| | | | | * gnu/packages/fontutils.scm (graphite2): Update to 1.3.5. [source, home-page]: Update to reflect upstream move to github.
* gnu: libsndfile: Update to 1.0.26 [with follow-up fix CVE-2015-7805].Mark H Weaver2016-02-15
| | | | | | | | | | Note: The previous fix for CVE-2015-7805 was incomplete. * gnu/packages/patches/libsndfile-CVE-2014-9496.patch, gnu/packages/patches/libsndfile-CVE-2015-7805.patch: Delete files. * gnu-system.am (dist_patch_DATA): Remove them. * gnu/packages/pulseaudio.scm (libsndfile): Update to 1.0.26. [source]: Remove patches.
* gnu: libgcrypt: Update to 1.6.5 [fixes CVE-2015-7511].Christopher Allan Webber2016-02-15
| | | | * gnu/packages/gnupg.scm (libgcrypt): Update to 1.6.5.
* gnu: btrfs-progs: Fix license.Leo Famulari2016-02-14
| | | | | | Reported by Tobias Geerinckx-Rice <tobias.geerinckx.rice@gmail.com> * gnu/packages/linux.scm (btrfs-progs)[license]: Add GPL2 to list of licenses.
* gnu: font-terminus: Update to 4.40Nils Gillmann2016-02-14
| | | | | | * gnu/packages/fonts.scm (font-terminus): Update to 4.40. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-ly: Update to 0.9.3.Andreas Enge2016-02-14
| | | | * gnu/packages/python.scm (python-ly): Update to 0.9.3.
* gnu: lxqt: Update source URLs to use HTTPS.Mark H Weaver2016-02-14
| | | | | * gnu/packages/lxqt.scm (libqtxdg, liblxqt, lxqt-common) (lxqt-session)[source]: Use HTTPS URLs.
* gnu: openbox: Update to 3.6.1.Efraim Flashner2016-02-14
| | | | * gnu/packages/openbox.scm (openbox): Update to 3.6.1.
* gnu: postgresql: Update to 9.3.11. [fixes ↵Efraim Flashner2016-02-14
| | | | | | CVE-2015-{5288,5289},CVE-2016-{0766,0773}] * gnu/packages/databases.scm (postgresql): Update to 9.3.11.
* gnu: Add baobab.Jochem Raat2016-02-13
| | | | * gnu/packages/gnome.scm (baobab): New variable.
* gnu: Add pianobar.Al McElrath2016-02-13
| | | | | | * gnu/packages/music.scm (pianobar): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add python-wtformsChristopher Allan Webber2016-02-13
| | | | * gnu/packages/python.scm (python-wtforms, python2-wtforms): New variables.
* doc: Correct typos.Andreas Enge2016-02-13
| | | | * doc/guix.texi: Correct typos, grammar and stylistic points.
* gnu: iproute: Update to 4.4.0.Alex Kost2016-02-13
| | | | * gnu/packages/linux.scm (iproute): Update to 4.4.0.
* gnu: iproute: Use 'modify-phases'.Alex Kost2016-02-13
| | | | * gnu/packages/linux.scm (iproute)[arguments]: Use 'modify-phases'.
* gnu: calibre: Update to 2.51.0.Andreas Enge2016-02-13
| | | | * gnu/packages/ebook.scm (calibre): Update to 2.51.0.
* gnu: gnuplot: Update to 5.0.2.Andreas Enge2016-02-13
| | | | * gnu/packages/maths.scm (gnuplot): Update to 5.0.2.
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