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* gnu: python-contextlib2: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-03
| | | | * gnu/packages/python-xyz.scm (python-contextlib2)[home-page]: Use HTTPS.
* gnu: python-flask-principal: Update home page.Tobias Geerinckx-Rice2020-03-03
| | | | | * gnu/packages/python-web.scm (python-flask-principal)[home-page]: Follow (HTTPS) redirection.
* gnu: python-gipc: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-03
| | | | * gnu/packages/python-xyz.scm (python-gipc)[home-page]: Use HTTPS.
* gnu: python-seaborn: Update & use HTTPS home page.Tobias Geerinckx-Rice2020-03-03
| | | | | * gnu/packages/python-xyz.scm (python-seaborn)[home-page]: Follow redirection, but use HTTPS.
* gnu: python-vobject: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-03
| | | | * gnu/packages/python-xyz.scm (python-vobject)[home-page]: Use HTTPS.
* gnu: python-activepapers: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-03
| | | | | * gnu/packages/python-xyz.scm (python-activepapers)[home-page]: Use HTTPS.
* gnu: tome4: Update to 1.6.7.Tobias Geerinckx-Rice2020-03-03
| | | | * gnu/packages/games.scm (tome4): Update to 1.6.7.
* gnu: shotwell: Update to 0.30.8.Tobias Geerinckx-Rice2020-03-03
| | | | * gnu/packages/gnome.scm (shotwell): Update to 0.30.8.
* gnu: gmime: Update to 3.2.6.Tobias Geerinckx-Rice2020-03-03
| | | | * gnu/packages/mail.scm (gmime): Update to 3.2.6.
* gnu: liblo: Update to 0.31.Tobias Geerinckx-Rice2020-03-03
| | | | * gnu/packages/audio.scm (liblo): Update to 0.31.
* gnu: fish: Don't use NAME in source URI.Tobias Geerinckx-Rice2020-03-03
| | | | * gnu/packages/shells.scm (fish)[source]: Hard-code NAME.
* gnu: gptfdisk: Update to 1.0.5.Tobias Geerinckx-Rice2020-03-03
| | | | | | * gnu/packages/disk.scm (gptfdisk): Update to 1.0.5. [source]: Hard-code NAME. [arguments]: Add ‘fix-include-directory’ phase.
* gnu: amtk: Update to 5.0.2.Tobias Geerinckx-Rice2020-03-03
| | | | * gnu/packages/gnome.scm (amtk): Update to 5.0.2.
* gnu: notmuch: Extend test time-out.Tobias Geerinckx-Rice2020-03-03
| | | | | * gnu/packages/mail.scm (notmuch)[arguments]: Add NOTMUCH_TEST_TIMEOUT=1h make flag.
* gnu: oil-shell: Update to 0.7.0.Tobias Geerinckx-Rice2020-03-03
| | | | * gnu/packages/shells.scm (oil-shell): Update to 0.7.0.
* gnu: serd: Update to 0.30.2.Tobias Geerinckx-Rice2020-03-03
| | | | * gnu/packages/rdf.scm (serd): Update to 0.30.2.
* gnu: python-pyudev: Update to 0.22.0.Tobias Geerinckx-Rice2020-03-03
| | | | * gnu/packages/admin.scm (python-pyudev): Update to 0.22.0.
* gnu: Go: Update to 1.13.8.Leo Famulari2020-03-02
| | | | * gnu/packages/golang.scm (go-1.13): Update to 1.13.8.
* gnu: Add system test for CUPS.Marius Bakke2020-03-02
| | | | | * gnu/tests/cups.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
* gnu: libgc: Fix replacement inheritance.Marius Bakke2020-03-02
| | | | | | * gnu/packages/bdw-gc.scm (libgc-8.0): Do not use PACKAGE/INHERIT, because it does not make sense to inherit any replacements of LIBGC. (libgc/back-pointers): Use PACKAGE/INHERIT.
* gnu: Add r-zseq.Ricardo Wurmus2020-03-02
| | | | * gnu/packages/cran.scm (r-zseq): New variable.
* gnu: Add r-ztype.Ricardo Wurmus2020-03-02
| | | | * gnu/packages/cran.scm (r-ztype): New variable.
* gnu: Add r-zvcv.Ricardo Wurmus2020-03-02
| | | | * gnu/packages/cran.scm (r-zvcv): New variable.
* gnu: Add r-zyp.Ricardo Wurmus2020-03-02
| | | | * gnu/packages/cran.scm (r-zyp): New variable.
* gnu: Add r-kendall.Ricardo Wurmus2020-03-02
| | | | * gnu/packages/cran.scm (r-kendall): New variable.
* gnu: python-smmap: Update to version 3.0.1, deprecate python-smmap2.Maxim Cournoyer2020-03-02
| | | | | | | | | * gnu/packages/python-xyz.scm (python-smmap): Rename from python-smmap2, and update to version 3.0.1. (python-smmap2, python2-smmap2): Preserve original bindings, marked as deprecated. * gnu/packages/version-control.scm (python-gitdb)[propagated-inputs]: Depend on the new python-smmap package.
* gnu: python-gitpython: Update to 3.1.0.Maxim Cournoyer2020-03-02
| | | | * gnu/packages/version-control.scm (python-gitpython): Update to 3.1.0.
* gnu: python-gitdb: Update to 4.0.2.Maxim Cournoyer2020-03-02
| | | | | | | * gnu/packages/version-control.scm (python-gitdb): Update to 4.0.2. [source]: Correct the PyPI URL to refer to the actual gitdb package, not a mirror. This mirror had a problematic setup.py install requirement that required gitdb>=4.0.1, which would cause run time errors when using snakemake.
* gnu: python-pyyaml: Update to 5.3.Maxim Cournoyer2020-03-02
| | | | * gnu/packages/python-xyz.scm (python-pyyaml): Update to 5.3.
* gnu: python-xenon: Update to 0.7.0.Maxim Cournoyer2020-03-02
| | | | | * gnu/packages/python-xyz.scm (python-xenon): Update to 0.7.0. [arguments]: Set #:tests? to #f to disable test suite.
* gnu: python-radon: Update to 4.1.0.Maxim Cournoyer2020-03-02
| | | | * gnu/packages/python-xyz.scm (python-radon): Update to 4.1.0.
* gnu: python-colorama: Update to 0.4.3.Maxim Cournoyer2020-03-02
| | | | * gnu/packages/python-xyz.scm (python-colorama): Update to 0.4.3.
* gnu: Add python-wget.Maxim Cournoyer2020-03-02
| | | | * gnu/packages/python-xyz.scm (python-wget): New variable.
* gnu: emacs-windower: Fix description.Nicolas Goaziou2020-03-02
| | | | | * gnu/packages/emacs-xyz.scm (emacs-windower): Fix Texinfo code for lists in description.
* gnu: r-forcats: Update to 0.5.0.Ricardo Wurmus2020-03-02
| | | | * gnu/packages/statistics.scm (r-forcats): Update to 0.5.0.
* gnu: r-testthat: Update to 2.3.2.Ricardo Wurmus2020-03-02
| | | | * gnu/packages/statistics.scm (r-testthat): Update to 2.3.2.
* gnu: r-openmx: Update to 2.17.3.Ricardo Wurmus2020-03-02
| | | | * gnu/packages/cran.scm (r-openmx): Update to 2.17.3.
* gnu: r-summarytools: Update to 0.9.6.Ricardo Wurmus2020-03-02
| | | | * gnu/packages/cran.scm (r-summarytools): Update to 0.9.6.
* gnu: r-officer: Update to 0.3.7.Ricardo Wurmus2020-03-02
| | | | | * gnu/packages/cran.scm (r-officer): Update to 0.3.7. [propagated-inputs]: Remove r-base64enc, r-htmltools, r-rcpp, and r-rlang.
* gnu: r-seqminer: Update to 8.0.Ricardo Wurmus2020-03-02
| | | | * gnu/packages/bioinformatics.scm (r-seqminer): Update to 8.0.
* gnu: ecl-clunit: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-02
| | | | * gnu/packages/lisp-xyz.scm (ecl-clunit)[home-page]: Use HTTPS.
* gnu: mapnik: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-02
| | | | * gnu/packages/geo.scm (mapnik)[home-page]: Use HTTPS.
* gnu: python-rq: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-02
| | | | * gnu/packages/databases.scm (python-rq)[home-page]: Use HTTPS.
* gnu: java-plexus-interpolation: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-02
| | | | * gnu/packages/java.scm (java-plexus-interpolation)[home-page]: Use HTTPS.
* gnu: amsynth: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-02
| | | | * gnu/packages/music.scm (amsynth)[home-page]: Use HTTPS.
* gnu: pootle: Use HTTPS home page.Tobias Geerinckx-Rice2020-03-02
| | | | * gnu/packages/django.scm (pootle)[home-page]: Use HTTPS.
* gnu: muse-sequencer: Update home page.Tobias Geerinckx-Rice2020-03-02
| | | | | * gnu/packages/music.scm (muse-sequencer)[home-page]: Follow (HTTPS) redirection.
* gnu: opensmtpd: Support ECDSA certificates.Tobias Geerinckx-Rice2020-03-02
| | | | | | | The required libressl version is now stable and more featureful than openssl. * gnu/packages/mail.scm (opensmtpd)[inputs]: Replace openssl with libressl.
* gnu: libressl: Update to 3.0.2.Tobias Geerinckx-Rice2020-03-02
| | | | * gnu/packages/tls.scm (libressl): Update to 3.0.2.
* gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.10.0.Tobias Geerinckx-Rice2020-03-02
| | | | * gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.
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