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* vm: Adapt qemu command to ARM.Mathieu Othacehe2017-12-15
| | | | | | | | | | | * gnu/build/vm.scm (load-in-linux-vm): New argument #:target-arm32. Use it to adapt command for qemu-system-arm. This implies to choose a machine ("virt"), use the correct console port "ttyAMA0", disable KVM use that is buggy on some ARM boards (Odroid XU4 for example) and use user mode network stack instead of NIC. Gather all those options in a new variable "arch-specific-flags". * gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass to load-in-linux-vm "#:target-arm32?" argument.
* doc: Fix typo.Oleg Pykhalov2017-12-15
| | | | * doc/guix.texi (DNS Services): Fix knot-configuration.
* gnu: ruby: Replace with ruby-2.4.3 [fixes CVE-2017-17405].Ben Woodcroft2017-12-15
| | | | | * gnu/packages/ruby.scm (ruby-2.4.3): New variable. (ruby)[replacement]: New field.
* gnu: bedtools: Update to 2.27.1.Ben Woodcroft2017-12-15
| | | | * gnu/packages/ruby.scm (bedtools): Update to 2.27.1.
* gnu: ruby-2.2: Update to 2.2.9 [fixes CVE-2017-17405].Ben Woodcroft2017-12-15
| | | | * gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.9.
* gnu: ruby-2.3: Update to 2.3.6 [fixes CVE-2017-17405].Ben Woodcroft2017-12-15
| | | | * gnu/packages/ruby.scm (ruby-2.3): Update to 2.3.6.
* gnu: yoshimi: Update to 1.5.5.Ricardo Wurmus2017-12-15
| | | | * gnu/packages/music.scm (yoshimi): Update to 1.5.5.
* guix: ant-build-system: Do not compress jars.Ricardo Wurmus2017-12-15
| | | | | | | Fixes <https://bugs.gnu.org/29700>. * guix/build/ant-build-system.scm (strip-jar-timestamps): Do not compress jar when repacking.
* gnu: s-shell: Update to commit da2e5c20c0c5f477ec3426dc2584889a789b1659.ng02017-12-14
| | | | | | | * gnu/packages/shells.scm (s-shell): Update to commit da2e5c20c0c5f477ec3426dc2584889a789b1659. [version]: Use 'git-version'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: xpra: Update to 2.2.Rutger Helling2017-12-14
| | | | | | | | * gnu/packages/xorg.scm (xpra): Update to 2.2. [inputs]: Add python2-netifaces and python2-pyopengl-accelerate. Fix position of commas. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python2-pyopengl-accelerate.Rutger Helling2017-12-14
| | | | | | * gnu/packages/python.scm (python2-pyopengl-accelerate): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: python-scikit-learn: Patch test non-determinism.Ben Woodcroft2017-12-14
| | | | | | | * gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch: New file. * gnu/packages/machine-learning.scm (python-scikit-learn)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: diamond: Update to 0.9.14.Ben Woodcroft2017-12-14
| | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.9.14.
* gnu: gucharmap: Use glib-or-gtk-build-system.Andy Wingo2017-12-14
| | | | * gnu/packages/gnome.scm (gucharmap): Use glib-or-gtk-build-system.
* gnu: Erlang: Update to 20.1.7 [fixes CVE-2017-1000385].Leo Famulari2017-12-13
| | | | | * gnu/packages/erlang.scm (erlang): Update to 20.1.7 (native-inputs): Use version-major+minor in the URI of erlang-manpages.
* gnu: youtube-dl: Update to 2017.12.14.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2017.12.14.
* gnu: r-caret: Update to 6.0-78.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/statistics.scm (r-caret): Update to 6.0-78
* gnu: r-domc: Update to 1.3.5.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/statistics.scm (r-domc): Update to 1.3.5
* gnu: perl-text-bibtex: Update to 0.85.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/tex.scm (perl-text-bibtex): Update to 0.85
* gnu: perl-test-requires: Update to 0.10.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/perl-check.scm (perl-test-requires): Update to 0.10
* gnu: perl-test-pod: Update to 1.51.Tobias Geerinckx-Rice2017-12-14
| | | | | * gnu/packages/perl-check.scm (perl-test-pod): Update to 1.51 [source]: Update URI.
* gnu: perl-test-mocktime: Update to 0.15.Tobias Geerinckx-Rice2017-12-14
| | | | | * gnu/packages/perl-check.scm (perl-test-mocktime): Update to 0.15 [propagated-inputs]: Add perl-time-piece.
* gnu: Add perl-time-piece.Tobias Geerinckx-Rice2017-12-14
| | | | * gnu/packages/perl.scm (perl-time-piece): New public variable.
* hydra: Pre-load the compiler.Ludovic Courtès2017-12-13
| | | | | | | | Starting from Guile 2.2.3, '%fresh-auto-compile' does what it says and would auto-compile everything, including the compiler (see <https://bugs.gnu.org/29226>). * build-aux/hydra/gnu-system.scm: Call 'compile'.
* hydra: Invalidate derivation caches after each architecture evaluation.Ludovic Courtès2017-12-13
| | | | | | | | This reduces max RSS from 1.3G to 1.0G. * guix/derivations.scm (invalidate-derivation-caches!): New procedure. * build-aux/hydra/gnu-system.scm (hydra-jobs): Use it. Add 'format' call.
* memoization: Add 'invalidate-memoization!.Ludovic Courtès2017-12-13
| | | | | | * guix/memoization.scm (%make-hash-table*): When not profiling, add the new table to %MEMOIZATION-TABLES. (invalidate-memoization!): New procedure.
* derivations: Don't memoize 'derivation-hash'.Ludovic Courtès2017-12-13
| | | | | | | | This has little or no run-time impact and slightly reduces the memory footprint. * guix/derivations.scm (derivation-hash): Replace 'mlambda' with 'lambda'.
* derivations: Split 'derivation-hash' in two procedures.Ludovic Courtès2017-12-13
| | | | | * guix/derivations.scm (derivation/masked-inputs): New procedure. (derivation-hash): Use it instead of the inline code.
* gnu: notmuch: Move elisp directory and generate autoloads.Arun Isaac2017-12-13
| | | | | | * gnu/packages/mail.scm (notmuch)[arguments]: Move elisp files to share/emacs/site-lisp/guix.d/notmuch-<version>. Add make-autoloads phase.
* pull: Add (guix profiling) to the build environment.Ludovic Courtès2017-12-13
| | | | | | Reported by Ricardo Wurmus. * build-aux/build-self.scm (build): Add (guix profiling).
* Revert "derivations: 'derivation-hash' assumes inputs are coalesced."Ludovic Courtès2017-12-13
| | | | | | This reverts commit 1d008d9f8c44dfdb808235d451b72f255e72f103. Reported by Rutger Helling <rhelling@mykolab.com>. Fixes <https://bugs.gnu.org/29689>.
* gnu: polyml: Update to 5.7.1.Tobias Geerinckx-Rice2017-12-13
| | | | * gnu/packages/sml.scm (polyml): Update to 5.7.1.
* gnu: guile-gdbm-ffi: Install documentation.Tobias Geerinckx-Rice2017-12-13
| | | | | * gnu/packages/guile.scm (guile-gdbm-ffi)[arguments]: Install README.md and some examples. Tidy up MKDIR-P calls.
* gnu: gtksourceview: Update to 3.24.6.Tobias Geerinckx-Rice2017-12-13
| | | | * gnu/packages/gtk.scm (gtksourceview): Update to 3.24.6
* vm: Use qemu drive device parameter.Mathieu Othacehe2017-12-13
| | | | | * gnu/build/vm.scm (load-in-linux-vm): Use device parameter to define drive device.
* gnu: cgit: Patch absolute file names.Oleg Pykhalov2017-12-13
| | | | * gnu/packages/version-control.scm (cgit): Patch absolute file names.
* gnu: Add krita.Mark Meyer2017-12-12
| | | | | | * gnu/packages/kde.scm (krita): New variable. Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
* doc: Fix typo.Tobias Geerinckx-Rice2017-12-12
| | | | * doc/guix.texi: Add missing ‘@*’ to copyright headers.
* gnu: xfig: Update to 3.2.6a.Tobias Geerinckx-Rice2017-12-12
| | | | | | | | * gnu/packages/xfig.scm (xfig): Update to 3.2.6a. [native-inputs]: Remove groff, imake, makedepend. Add desktop-file-utils. [inputs]: Remove libxmu and zlib. [arguments]: Remove custom phases. Add a ‘strip-bogus-exec-prefix’ phase. Run the rudimentary test suite.
* gnu: services: Add php-fpm.nee2017-12-12
| | | | | | | | | | | | | * gnu/services/web.scm (<php-fpm-configuration>, <php-fpm-process-manager-configuration>): New record types. (php-fpm-configuration?, php-fpm-process-manager-configuration?, php-fpm-service-type, nginx-php-location): New procedures. * doc/guix.texi (Web-Services): Document php-fpm service. * gnu/tests/web.scm: Add php-fpm system test. Signed-off-by: Christopher Baines <mail@cbaines.net>
* gnu: meson: Update to 0.44.0.Tobias Geerinckx-Rice2017-12-12
| | | | * gnu/packages/build-tools.scm (meson): Update to 0.44.0
* gnu: miniupnpc: Update to 2.0.20171212.Tobias Geerinckx-Rice2017-12-12
| | | | * gnu/packages/upnp.scm (miniupnpc): Update to 2.0.20171212.
* gnu: global: Update to 6.6.Efraim Flashner2017-12-12
| | | | * gnu/packages/code.scm (global): Update to 6.6.
* derivations: 'derivation-hash' assumes inputs are coalesced.Ludovic Courtès2017-12-12
| | | | | * guix/derivations.scm (derivation-hash): Remove redundant 'coalesce-duplicate-inputs' call.
* derivations: Use 'define-immutable-record-type' as appropriate.Ludovic Courtès2017-12-12
| | | | | | | This is a followup to dc673fa1131fb5d1e5ca29acb4a693cfb906986f. * guix/derivations.scm (<derivation-output>, <derivation-input>): Use 'define-immutable-record-type'.
* memoization: Profiling support keeps track of lookups and hits.Ludovic Courtès2017-12-12
| | | | | | | | | | | * guix/memoization.scm (<cache>): New record type. (define-lookup-procedure, define-update-procedure): New macros. (cache-ref, cacheq-ref, cache-set!, cacheq-set!): New procedures. (cached/mv, cachedq/mv, cached, cachedq): Use them instead of 'hash-ref' and 'hash-set!'. (%make-hash-table*): When 'profiled?' returns true, return a <cache> object. (define-cache-procedure): Adjust to show cache lookups and hits.
* memoization: Add profiling support.Ludovic Courtès2017-12-12
| | | | | | | | | | * guix/memoization.scm (%memoization-tables): New variable. (%make-hash-table*, show-memoization-tables): New procedures. (make-hash-table*): New macro. Add top-level call to 'register-profiling-hook!'. (memoize): Adjust to pass the resulting procedure to 'make-hash-table*'. (%mlambda): Likewise.
* Add (guix profiling).Ludovic Courtès2017-12-12
| | | | | | | * guix/profiling.scm: New file. * Makefile.am (MODULES): Add it. * guix/store.scm (record-operation): Use 'profiled?' and 'register-profiling-hook!'.
* gnu: xfig, transfig: Update home pages.Tobias Geerinckx-Rice2017-12-12
| | | | * gnu/packages/xfig.scm (xfig, transfig)[home-page]: Use SourceForge.net.
* gnu: Add uthash.Tobias Geerinckx-Rice2017-12-12
| | | | * gnu/packages/datastructures.scm (uthash): New public variable.