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* gnu: linux-libre@4.4: Update to 4.4.103.Mark H Weaver2017-12-01
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.103.
* doc: Update the example VCS snapshot package definition.Kei Kebreau2017-11-30
| | | | | | | | In commit ee17a9e06e636400e3354796a42ac445dbcc8f96, the helpers git-version and git-file-name removed the need to build version and file name strings manually for packages that use VCS snapshots. doc/guix.texi (Version Numbers): Use git-version and git-file-name.
* gnu: qemu: Enable seccomp support.Rutger Helling2017-11-30
| | | | | | * gnu/packages/virtualization.scm (qemu)[inputs]: Add libseccomp. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: fish-guix: Update to 0.1.2.1.ng02017-11-30
| | | | | | | * gnu/packages/shells.scm (fish-guix): Update to 0.1.2.1. (license): Switch to bsd-3. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* vm: Filter out file systems that refer to UUIDs or labels.Ludovic Courtès2017-11-30
| | | | | * gnu/system/vm.scm (virtualized-operating-system)[user-file-systems]: Filter out things that refer to file system UUIDs or labels.
* gnu: monero-core: Fix missing dependency.Vasile Dumitrascu2017-11-30
| | | | | | * gnu/packages/finance.scm (monero-core)[inputs]: Add readline. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add xautolock.Mike Gerwitz2017-11-30
| | | | | | * gnu/packages/xdisorg.scm (xautolock): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* ui: Present 'use-modules' hints with a question mark.Ludovic Courtès2017-11-30
| | | | | | | Suggested by myglc2 <myglc2@gmail.com>. * guix/ui.scm (report-load-error): Write "Did you forget" rather than "Try adding."
* gnu: jellyfish: Update to 2.2.7.Ricardo Wurmus2017-11-30
| | | | | | * gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7. [native-inputs]: Add pkg-config. [inputs]: Add htslib.
* gnu: r-bigmemory: Update to 4.5.31.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31. [propagated-inputs]: Remove r-r-utils.
* gnu: r-cowplot: Update to 0.9.1.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1. [propagated-inputs]: Add r-scales.
* gnu: r-rcppprogress: Update to 0.4.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4. [propagated-inputs]: Add r-devtools.
* gnu: r-rmarkdown: Update to 1.8.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8. [propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
* gnu: r-batchjobs: Update to 1.7.Ricardo Wurmus2017-11-30
| | | | | | * gnu/packages/statistics.scm (r-batchjobs): Update to 1.7. [propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove r-fail and r-stringr.
* gnu: r-pracma: Update to 2.1.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
* gnu: r-annotationhub: Update to 2.10.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.1.
* gnu: r-msnid: Update to 1.12.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
* gnu: r-maldiquant: Update to 1.17.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
* gnu: r-genomicalignments: Update to 1.14.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
* gnu: r-limma: Update to 3.34.2.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
* gnu: r-variantannotation: Update to 1.24.2.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
* gnu: r-getopt: Update to 1.20.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
* gnu: r-gseabase: Update to 1.40.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
* gnu: r-dexseq: Update to 1.24.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.1.
* gnu: r-deseq2: Update to 1.18.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.1.
* gnu: r-annotate: Update to 1.56.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.1.
* gnu: r-circlize: Update to 0.4.2.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/cran.scm (r-circlize): Update to 0.4.2.
* gnu: r-rcpp: Update to 0.12.14.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/cran.scm (r-rcpp): Update to 0.12.14.
* gnu: r-timedate: Update to 3042.101.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/cran.scm (r-timedate): Update to 3042.101.
* gnu: r-stringi: Update to 1.1.6.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
* gnu: r-devtools: Update to 1.13.4.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
* gnu: r-mclust: Update to 5.4.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-mclust): Update to 5.4.
* gnu: r-rcppeigen: Update to 0.3.3.3.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
* gnu: r-car: Update to 2.1-6.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-car): Update to 2.1-6.
* gnu: r-sn: Update to 1.5-1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
* gnu: r-openssl: Update to 0.9.9.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
* gnu: r-hms: Update to 0.4.0.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-hms): Update to 0.4.0. [propagated-inputs]: Add r-rlang and r-pkgconfig.
* gnu: r-dendextend: Update to 1.6.0.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/cran.scm (r-dendextend): Update to 1.6.0.
* gnu: r-recipes: Update to 0.1.1.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/cran.scm (r-recipes): Update to 0.1.1. [propagated-inputs]: Add r-broom and r-matrix.
* gnu: Add r-broom.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/cran.scm (r-broom): New variable.
* gnu: Add r-psych.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/cran.scm (r-psych): New variable.
* gnu: mongodb: Use scons-build-system.Arun Isaac2017-11-30
| | | | * gnu/packages/databases.scm (mongodb): Switch to scons-build-system.
* gnu: klick: Use scons-build-system.Arun Isaac2017-11-30
| | | | * gnu/packages/music.scm (klick): Switch to scons-build-system.
* gnu: pingus: Use scons-build-system.Arun Isaac2017-11-30
| | | | * gnu/packages/games.scm (pingus): Switch to scons-build-system.
* gnu: godot: Use scons-build-system.Arun Isaac2017-11-30
| | | | * gnu/packages/game-development.scm (godot): Switch to scons-build-system.
* gnu: metabat: Use scons-build-system.Arun Isaac2017-11-30
| | | | * gnu/packages/bioinformatics.scm (metabat): Switch to scons-build-system.
* gnu: serf: Use scons-build-system.Arun Isaac2017-11-30
| | | | * gnu/packages/web.scm (serf): Switch to scons-build-system.
* gnu: gpick: Use scons-build-system.Arun Isaac2017-11-30
| | | | * gnu/packages/image.scm (gpick): Switch to scons-build-system.
* gnu: linuxdcpp: Use scons-build-system.Arun Isaac2017-11-30
| | | | * gnu/packages/direct-connect.scm (linuxdcpp): Switch to scons-build-system.
* build-system: Add scons-build-system.Arun Isaac2017-11-30
| | | | | | | * guix/build-system/scons.scm: New file. * guix/build/scons-build-system.scm: New file. * Makefile.am (MODULES): Register them. * doc/guix.texi (Build Systems): Add scons-build-system.
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