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* gnu: curl: Replace with 7.50.1 [fixes CVE-2016-{3739,4802,5419,5420,5421].Leo Famulari2016-08-04
| | | | | * gnu/packages/curl.scm (curl)[replacement]: New field. (curl-7.50.1): New variable.
* gnu: zsh: Move to shells.scm.Tobias Geerinckx-Rice2016-08-04
| | | | | | | * gnu/packages/zsh.scm (zsh): Move from here ... * gnu/packages/shells.scm (zsh): ... to here. * gnu/packages/zsh.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove zsh.scm.
* Update NEWS.Ludovic Courtès2016-08-04
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* Merge branch 'core-updates'Mark H Weaver2016-08-04
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| * install: Add nvi to the image.Ludovic Courtès2016-08-01
| | | | | | | | | | * gnu/system/install.scm (installation-os)[packages]: Add NVI. * doc/guix.texi (Proceeding with the Installation): Mention it.
| * build: Set XDG_CACHE_HOME to avoid loading stale .go files.Ludovic Courtès2016-08-01
| | | | | | | | | | | | | | Fixes <http://bugs.gnu.org/24120>. Reported by myglc2 <myglc2@gmail.com>. * Makefile.am (make-go): Set XDG_CACHE_HOME.
| * Update NEWS.Ludovic Courtès2016-08-01
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| * gnu: texlive-texmf: Mark as non-substitutable.Ludovic Courtès2016-08-01
| | | | | | | | * gnu/packages/tex.scm (texlive-texmf)[arguments]: Add #:substitutable?.
| * gnu: unison: Add input ghostscript.Andreas Enge2016-08-01
| | | | | | | | | | | | * gnu/packages/ocaml.scm (unison)[native-inputs]: Add ghostscript. This is a follow-up to commit e83a13faa221fe65eb86dee224a3f2aab9e13c60.
| * Merge branch 'master' into core-updatesMark H Weaver2016-07-31
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| * | gnu: ecl: Use "kernel-headers" instead of "linux-headers" to designate input.Andy Patterson2016-07-31
| | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/lisp.scm (ecl)[arguments]: Use "kernel-headers" as the identifier for an input. This is a follow-up to commit 55de892b435657f82a25c6499174d09b4a680f15. Signed-off-by: Andreas Enge <andreas@enge.fr>
| * | tests: 'guix-environment-container.sh' works when run from a tmpfs.Ludovic Courtès2016-07-31
| | | | | | | | | | | | | | | | | | | | | | | | | | | Fixes <http://bugs.gnu.org/22004>. Reported by Ting-Wei Lan <lantw44@gmail.com>. * tests/guix-environment-container.sh (mount_test_code): Add 'match' clause to ignore "/"; augment clause that ignores specific file system types such that it does not ignore parent mount points.
| * | download: Add mirror.hydra.gnu.org as a content-addressed mirror.Ludovic Courtès2016-07-31
| | | | | | | | | | | | | | | * guix/download.scm (%content-addressed-mirrors): Add 'mirror.hydra.gnu.org'.
| * | download: Pass the raw file name to content-addressed mirrors.Ludovic Courtès2016-07-31
| | | | | | | | | | | | | | | * guix/build/download.scm (url-fetch)[content-addressed-uris]: Call 'strip-store-file-name' on FILE before passing it to 'make-url'.
| * | gnu: rapicorn: Add patch to handle isnan.Andreas Enge2016-07-31
| | | | | | | | | | | | | | | | | | * gnu/packages/patches/rapicorn-isnan.patch: New file. * gnu/packages/graphics.scm (rapicorn)[source]: Add patch. * gnu/local.mk (dist_patch_DATA): Register patch.
| * | gnu: fastcap: Add input ghostscript.Andreas Enge2016-07-31
| | | | | | | | | | | | | | | | | | * gnu/packages/engineering.scm (fastcap)[native-inputs]: Add ghostscript. This is a follow-up to commit e83a13faa221fe65eb86dee224a3f2aab9e13c60.
| * | gnu: zsh: Update to 5.2.Andreas Enge2016-07-31
| | | | | | | | | | | | * gnu/packages/zsh.scm (zsh): Update to 5.2.
| * | gnu: tcc: Use "kernel-headers" instead of "linux-headers" to designate input.Andreas Enge2016-07-31
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/c.scm (tcc)[arguments]: Use "kernel-headers" as identifier for an input. This is a follow-up to commit 55de892b435657f82a25c6499174d09b4a680f15.
| * | gnu: dealii: Unregister deleted patch.Andreas Enge2016-07-31
| | | | | | | | | | | | | | | | | | * gnu/local.mk (dist_patch_DATA): Drop deleted patch. This is a follow-up to commit 101e847294dc403d5a7ef222117ad9070223b86b.
| * | gnu: dealii: Update to 8.4.1.Andreas Enge2016-07-31
| | | | | | | | | | | | | | | * gnu/packages/maths.scm (dealii): Update to 8.4.1. * gnu/packages/patches/dealii-p4est-interface.patch: Remove file.
| * | gnu: wine: Update to 1.9.15.Andreas Enge2016-07-31
| | | | | | | | | | | | * gnu/packages/wine.scm (wine): Update to 1.9.15.
| * | gnu: python-alembic: Update to 0.8.7.Andreas Enge2016-07-31
| | | | | | | | | | | | * gnu/packages/python.scm (python-alembic): Update to 0.8.7.
| * | gnu: perl-xml-libxml: Update to 2.0128.Andreas Enge2016-07-31
| | | | | | | | | | | | * gnu/packages/xml.scm (perl-xml-libxml): Update to 2.0128.
| * | gnu: glibc-locales: Fix build.宋文武2016-07-31
| | | | | | | | | | | | | | | | | | * gnu/packages/patches/glibc-locales.patch: Adjust to glibc-2.23. * gnu/packages/base.scm (glibc-locales)[arguments]: Pass 'lib_cv_complocaledir'.
| * | gnu: Add glibc 2.22.Ludovic Courtès2016-07-30
| | | | | | | | | | | | | | | * gnu/packages/base.scm (glibc-2.22): New variable. (glibc-2.21): Inherit from it; remove 'arguments' field.
| * | tests: base: Correct invalid merge.Ludovic Courtès2016-07-30
| | | | | | | | | | | | | | | | | | | | | | | | Fixes a regression introduced by merge commit 7575655212ecfbcd1f04e429c8a7a41f8720d027. * gnu/tests/base.scm (run-basic-test)[test]: Fix list of 'use-modules' and 'test-begin' call.
| * | Merge branch 'master' into core-updatesMark H Weaver2016-07-29
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| * \ \ Merge branch 'master' into core-updatesMark H Weaver2016-07-29
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| * \ \ \ Merge branch 'master' into core-updatesLeo Famulari2016-07-28
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| * \ \ \ \ Merge branch 'master' into core-updatesMark H Weaver2016-07-28
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| * | | | | | gnu: dico: Patch 'idxgcide' bug.Ludovic Courtès2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/dico-idxgcide-bug.patch: New file. * gnu/packages/dico.scm (dico)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
| * | | | | | gnu: vlc: Drop -ffast-math from the compilation flags.Ludovic Courtès2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/video.scm (vlc)[arguments]: Add "ac_cv_c_fast_math=no" to #:configure-flags.
| * | | | | | gnu: r-bsgenome: Update to 1.40.1.Ben Woodcroft2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.1.
| * | | | | | gnu: r-iranges: Update to 2.6.1.Ben Woodcroft2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-iranges): Update to 2.6.1.
| * | | | | | gnu: r-limma: Update to 3.28.17.Ben Woodcroft2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.17.
| * | | | | | gnu: r-xvector: Update to 0.12.1.Ben Woodcroft2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.1.
| * | | | | | gnu: r-genomicranges: Update to 1.24.2.Ben Woodcroft2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.2.
| * | | | | | gnu: r-annotationdbi: Update to 1.34.4.Ben Woodcroft2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.4.
| * | | | | | gnu: r-biocparallel: Update to 1.6.3.Ben Woodcroft2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.3.
| * | | | | | gnu: r-biostrings: Update to 2.40.2.Ben Woodcroft2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.2.
| * | | | | | gnu: r-summarizedexperiment: Update to 1.2.3.Ben Woodcroft2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.3.
| * | | | | | gnu: r-genomicalignments: Update to 1.8.4.Ben Woodcroft2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.4.
| * | | | | | gnu: r-rtracklayer: Update to 1.32.2.Ben Woodcroft2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2.
| * | | | | | gnu: r-genomeinfodb: Update to 1.8.3.Ben Woodcroft2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3.
| * | | | | | gnu: r-genomicfeatures: Update to 1.24.5.Ben Woodcroft2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.5.
| * | | | | | gnu: r-s4vectors: Update to 0.10.2.Ben Woodcroft2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2.
| * | | | | | gnu: asymptote: Add native input gs.Andreas Enge2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/plotutils.scm (asymptote)[native-inputs]: Add gs. This is a follow-up to commit d8eb912132ccdff955e3318fe549c5f7f674adf8.
| * | | | | | Merge remote-tracking branch 'origin/master' into core-updatesAndreas Enge2016-07-28
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| * | | | | | | gnu: python@2.7: Delete faulty test on mips64el only.Ludovic Courtès2016-07-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This amends 8b732bf6d93ad2cb529c3c5f886efe2625c5fb72 and avoids a rebuild. * gnu/packages/python.scm (python-2.7)[arguments] <pre-check>: When (%current-system) starts with "mips64el", delete Lib/test/test_ctypes.py.
| * | | | | | | gnu: python-2.7: Disable test failing on mips64el-linux.Andreas Enge2016-07-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-2.7)[source]: In a snippet, remove an additional test that fails on mips64el-linux.
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