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* gnu: r-xvector: Update to 0.24.0.•••* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.24.0. Ricardo Wurmus2019-05-06
* gnu: r-limma: Update to 3.40.0.•••* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.0. Ricardo Wurmus2019-05-06
* gnu: r-variantannotation: Update to 1.30.0.•••* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.0. [propagated-inputs]: Add r-rhtslib. Ricardo Wurmus2019-05-06
* gnu: r-edger: Update to 3.26.0.•••* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.0. Ricardo Wurmus2019-05-06
* gnu: r-genomeinfodb: Update to 1.20.0.•••* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.20.0. Ricardo Wurmus2019-05-06
* gnu: r-iranges: Update to 2.18.0.•••* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.0. Ricardo Wurmus2019-05-06
* gnu: r-s4vectors: Update to 0.22.0.•••* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.0. Ricardo Wurmus2019-05-06
* gnu: r-bioccheck: Update to 1.20.0.•••* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.20.0. Ricardo Wurmus2019-05-06
* gnu: r-biocstyle: Update to 2.12.0.•••* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.12.0. Ricardo Wurmus2019-05-06
* gnu: r-biocviews: Update to 1.52.0.•••* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.0. Ricardo Wurmus2019-05-06
* gnu: r-grohmm: Update to 1.18.0.•••* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.18.0. Ricardo Wurmus2019-05-06
* gnu: r-shortread: Update to 1.42.0.•••* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.42.0. Ricardo Wurmus2019-05-06
* gnu: r-gostats: Update to 2.50.0.•••* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.50.0. Ricardo Wurmus2019-05-06
* gnu: r-category: Update to 2.50.0.•••* gnu/packages/bioinformatics.scm (r-category): Update to 2.50.0. Ricardo Wurmus2019-05-06
* gnu: r-gseabase: Update to 1.46.0.•••* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.46.0. Ricardo Wurmus2019-05-06
* gnu: r-rbgl: Update to 1.60.0.•••* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.60.0. [propagated-inputs]: Add r-bh. Ricardo Wurmus2019-05-06
* gnu: r-annotationforge: Update to 1.26.0.•••* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.26.0. Ricardo Wurmus2019-05-06
* gnu: r-dexseq: Update to 1.30.0.•••* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.30.0. Ricardo Wurmus2019-05-06
* gnu: r-deseq2: Update to 1.24.0.•••* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.24.0. Ricardo Wurmus2019-05-06
* gnu: r-genefilter: Update to 1.66.0.•••* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.66.0. Ricardo Wurmus2019-05-06
* gnu: r-preprocesscore: Update to 1.46.0.•••* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.46.0. Ricardo Wurmus2019-05-06
* gnu: r-rgraphviz: Update to 2.28.0.•••* gnu/packages/graph.scm (r-rgraphviz): Update to 2.28.0. Ricardo Wurmus2019-05-06
* gnu: r-units: Update to 0.6-3.•••* gnu/packages/cran.scm (r-units): Update to 0.6-3. Ricardo Wurmus2019-05-06
* gnu: Add r-dqrng.•••* gnu/packages/cran.scm (r-dqrng): New variable. Ricardo Wurmus2019-05-06
* gnu: Add r-sitmo.•••* gnu/packages/cran.scm (r-sitmo): New variable. Ricardo Wurmus2019-05-06
* gnu: Add r-clue.•••* gnu/packages/cran.scm (r-clue): New variable. Ricardo Wurmus2019-05-06
* gnu: Add r-batchtools.•••* gnu/packages/cran.scm (r-batchtools): New variable. Ricardo Wurmus2019-05-06
* gnu: Add r-blme.•••* gnu/packages/cran.scm (r-blme): New variable. Ricardo Wurmus2019-05-06
* gnu: Add r-scrime.•••* gnu/packages/cran.scm (r-scrime): New variable. Ricardo Wurmus2019-05-06
* gnu: Add r-grimport2.•••* gnu/packages/cran.scm (r-grimport2): New variable. Ricardo Wurmus2019-05-06
* gnu: Add r-rcpphnsw.•••* gnu/packages/cran.scm (r-rcpphnsw): New variable. Ricardo Wurmus2019-05-06
* gnu: Add r-biocsingular.•••* gnu/packages/bioconductor.scm (r-biocsingular): New variable. Ricardo Wurmus2019-05-06
* gnu: Add r-base64url.•••* gnu/packages/cran.scm (r-base64url): New variable. Ricardo Wurmus2019-05-06
* guix: Update to Bioconductor 3.9.•••* guix/build-system/r.scm (bioconductor-uri): Use 3.9 archive URL. * guix/import/cran.scm (%bioconductor-version): Update to 3.9. Ricardo Wurmus2019-05-06
* doc: Fix typo.•••* doc/guix.texi (VM): Add missing dot. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel2019-05-05
* doc: Fix typo.•••* doc/guix.texi (xfce-desktop-service-type): Fix sentence. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel2019-05-05
* doc: Fix typo.•••* doc/guix.texi (page-log@files-configuration@CUPS): "Page log" instead of "access log". Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel2019-05-05
* doc: Fix typos.•••* doc/guix.texi (set-xorg-configuration): Add missing @code tag. (error-log@files-configuration@CUPS): "Error log" instead of "access log". Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel2019-05-05
* doc: Fix typo.•••* doc/guix.texi (rsync-service-type): Add missing sentence. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel2019-05-05
* doc: Fix typo.•••* doc/guix.texi (openntpd-configuration): Fix spelling issues. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel2019-05-05
* doc: Fix typos.•••* doc/guix.texi (rakudo-build-system, libvirt-configuration, pam-krb5): Missing period between sentences. (gnu services vpn): Fix server spelling. (agetty-configuration): Add missing subject in the sentence. (udev-service): Fix markup for Scheme procedures. ({gnome,xfce,mate}-desktop-service): Add missing colon after default. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel2019-05-05
* installer: Fix typo.•••* gnu/installer/newt/menu.scm (run-menu-page): Add missing space after period. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel2019-05-05
* Correct email and license info for Brendan Tildesley.•••* gnu/packages/audio.scm: Correct email and license info. * gnu/packages/ebook.scm: Correct email and license info. * gnu/packages/fonts.scm: Correct email and license info. * gnu/packages/freedesktop.scm: Correct email and license info. * gnu/packages/gnome.scm: Correct email and license info. * gnu/packages/linux.scm: Correct email and license info. * gnu/packages/lxde.scm: Correct email and license info. * gnu/packages/python-web.scm: Correct email and license info. * gnu/packages/python-xyz.scm: Correct email and license info. * gnu/packages/python.scm: Correct email and license info. * gnu/packages/video.scm: Correct email and license info. * gnu/packages/web.scm: Correct email and license info. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley2019-05-05
* gnu: calibre: Update to 3.42.0.•••* gnu/packages/ebook.scm (calibre): Update to 3.42.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Danny Milosavljevic2019-05-05
* gnu: calibre: Shorten long line.•••* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]: Shorten long line. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley2019-05-05
* gnu: calibre: Install man pages.•••* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[install-man-pages]: New phase. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley2019-05-05
* gnu: calibre: Delete various junk from source.•••* gnu/packages/ebook.scm (calibre)[source](snippet): Delete various junk from source. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley2019-05-05
* gnu: calibre: Remove libxrender as an input.•••* gnu/packages/ebook.scm (calibre)[inputs]: Remove libxrender. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley2019-05-05
* gnu: calibre: Unbundle python2-odfpy.•••* gnu/packages/ebook.scm (calibre)[snippet]: Remove all of src/odf. [inputs]: Add python2-odfpy. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley2019-05-05
* gnu: calibre: Remove some comments.•••* gnu/packages/ebook.scm (calibre): There is no unrar in Guix currently, and pdftohtml is in poppler, so we can remove this comment. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley2019-05-05
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