| Commit message (Collapse) | Author | Age |
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* gnu/packages/check.scm (python-hypothesis)[native-inputs]: Change
PYTHON-FLAKE8 to PYTHON-FLAKE8-3.5.
* gnu/packages/python.scm (python-flake8, python2-flake8): Rename to ...
(python-flake8-3.5, python2-flake8-3.5): ... this.
(python-flake8, python2-flake8): New public variables.
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* gnu/packages/python.scm (python-attrs): Update to 18.2.0.
[arguments]: New field.
[native-inputs]: Add PYTHON-PYMPLER.
(python-attrs-bootstrap): Stay on version 17.4.0.
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* gnu/packages/python.scm (python-pympler, python2-pympler): New public variables.
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* gnu/packages/audio.scm (suil)[arguments]: Set #:python.
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* gnu/packages/gtk.scm (ganv)[arguments]: Set #:python.
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* gnu/packages/python.scm (python-stem): Update to 1.7.0.
[arguments]: Remove obsolete phase.
[native-inputs]: Change PYTHON-PEP8 to PYTHON-PYCODESTYLE.
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* gnu/packages/python.scm (python-datrie)[arguments]: Add phase 'cythonize'.
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* gnu/packages/python.scm (python-pymongo): Update to 3.7.2.
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* gnu/packages/python.scm (python-sure): Update to 1.4.11.
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* gnu/packages/python.scm (python-markdown): Update to 3.0.1.
[arguments]: Remove.
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* gnu/packages/python.scm (python-markdown)[home-page]: Change to current.
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* gnu/packages/python-crypto.scm (python-m2crypto): Update to 0.30.1.
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* gnu/packages/python-crypto.scm (python-m2crypto)[propagated-inputs]: Remove.
[properties]: New field.
(python2-m2crypto)[propagated-inputs]: Add PYTHON2-TYPING.
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* gnu/packages/xorg.scm (xorg-server): Update to 1.20.2.
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* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.28.1.
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* gnu/packages/crypto.scm (libmd): Update to 1.0.1.
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* gnu/packages/samba.scm (samba): Update to 4.8.6.
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* gnu/packages/build-tools.scm (gn): New public variable.
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* gnu/packages/python.scm (python-lazy-object-proxy): Update to 1.3.1.
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* gnu/packages/python.scm (python-mistune): Update to 0.8.4.
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* gnu/packages/lxqt.scm (liblxqt): Update to 0.13.0.
[source]: Remove patches.
[home-page]: Use HTTPS.
* gnu/packages/patches/liblxqt-include.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
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* gnu/packages/lxqt.scm (libqtxdg): Update to 3.2.0.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
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* gnu/packages/emacs.scm (emacs-scribble-mode): New variable.
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* gnu/packages/education.scm (snap): Update to 4.2.2.2. Update source URL.
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* gnu/packages/bioconductor.scm (r-ruvseq): New variable.
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* gnu/packages/video.scm (livemedia-utils): Update to 2018.10.17.
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* gnu/packages/mpd.scm (libmpdclient): Update to 2.16.
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* gnu/packages/dns.scm (knot): Update to 2.7.3.
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* gnu/packages/ssh.scm (openssh): Update to 7.9p1.
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* gnu/packages/linux.scm (light): Update to 1.2.
[source]: Switch to url-fetch.
[arguments]: Remove.
[native-inputs]: Remove help2man. Add autoconf and automake.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python.scm (python-ilinkedlist): New variable.
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* gnu/build/install.scm (populate-single-profile-directory): Make
/var/guix/profiles/per-user/root/guix-profile a relative symlink.
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* gnu/packages/bioinformatics.scm (flexbar): Update to 3.4.0.
[source]: Fetch from git.
[arguments]: Adjust check and install phases.
[home-page]: Update to new home at Github.
[license]: Change to bsd-3.
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* gnu/packages/bioinformatics.scm (seqan): Update to 2.4.0.
[native-inputs]: Replace bzip2 with xz.
(seqan-1): New variable.
(tophat)[inputs]: Use seqan-1.
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* gnu/packages/bioinformatics.scm (khmer): Update to 2.1.2.
[source]: Fetch from git; remove bundled libraries in snippet.
[arguments]: Remove "set-paths" phase; remove "post-install-check" phase;
remove "reset-gzip-timestamps" phase.
[native-inputs]: Remove seqan and python-nose; add python-cython,
python-pytest, and python-pytest-runner.
[inputs]: Remove gcc-4.9.
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* gnu/packages/bioinformatics.scm (python-screed): Update to 1.0.
[arguments]: Run tests after installation.
[native-inputs]: Add python-pytest, python-pytest-cov, and
python-pytest-runner; remove python-nose.
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* gnu/packages/bioinformatics.scm (fasttree)[arguments]: Use INVOKE; simplify
install phase.
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* gnu/packages/bioinformatics.scm (express-beta-diversity): Update to 1.0.8.
[source]: Fetch from git.
[arguments]: Use INVOKE; remove "exit-source" build phase; simplify.
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* gnu/packages/bioinformatics.scm (edirect): Update to 10.2.20181018.
[arguments]: Add simple check phase; simplify other phases.
[inputs]: Add perl-xml-simple.
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* gnu/packages/bioinformatics.scm (eigensoft): Update to 7.2.1.
[arguments]: Remove Makefile modification.
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* gnu/packages/bioinformatics.scm (discrover)[source]: Fetch from git.
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* gnu/packages/tex.scm (texlive-latex-examplep): New variable.
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* gnu/packages/tex.scm (texlive-latex-verbatimbox): New variable.
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* gnu/packages/tex.scm (texlive-latex-readarray): New variable.
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* gnu/packages/tex.scm (texlive-generic-listofitems): New variable.
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* gnu/packages/tex.scm (texlive-latex-doi): New variable.
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* gnu/packages/bioinformatics.scm (diamond)[source]: Fetch from git.
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* gnu/packages/bioinformatics.scm (delly): Update to 0.7.9.
[source]: Fetch from git.
[arguments]: Add phase install-templates; use default install phase.
[native-inputs]: Remove python-2.
[home-page]: Use new home page.
* gnu/packages/patches/delly-use-system-libraries.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
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* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.3.
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