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* gnu: wordnet: Make sure the self-reference is visible to the GC.Ludovic Courtès2016-10-05
| | | | | | | | Before that, "guix gc --references $(guix build wordnet)" would not show WordNet itself, erroneously so. * gnu/packages/wordnet.scm (wordnet)[arguments]: Add -fno-builtin-strcpy to #:configure-flags.
* gnu: wordnet: Compile with optimizations.Ludovic Courtès2016-10-05
| | | | | * gnu/packages/wordnet.scm (wordnet)[arguments]: Add -O2 to #:configure-flags.
* gnu: Add hyperrogue.Kei Kebreau2016-10-05
| | | | * gnu/packages/games.scm (hyperrogue): New variable.
* gnu: grub: Make dependency on mdadm explicit.Ludovic Courtès2016-10-05
| | | | | | * gnu/packages/grub.scm (grub)[arguments]: Path getroot.c in 'patch-stuff' phase. [inputs]: Add MDADM.
* gnu: gsl: Disable failing tests on i686.Ludovic Courtès2016-10-05
| | | | | | * gnu/packages/patches/gsl-test-i686.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (gsl)[source](patches): New field.
* gnu: git: Update to 2.10.1.Leo Famulari2016-10-05
| | | | * gnu/packages/version-control.scm (git): Update to 2.10.1.
* gnu: guix: Honor the user's 'GUILE_LOAD_PATH'.Ludovic Courtès2016-10-04
| | | | | * gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Use 'prefix' when wrapping 'guix' for 'GUILE_LOAD_PATH'.
* mapped-devices: Properly open RAID devices.Ludovic Courtès2016-10-04
| | | | | | | | This fixes a type error introduced in 7f8ad82bf23b032ad6bd85bb1daa87cc83de509c, given that SOURCES is a list. * gnu/system/mapped-devices.scm (open-raid-device): Add 'apply' invocation.
* gnu: Add GoAccess.Ludovic Courtès2016-10-04
| | | | * gnu/packages/web.scm (goaccess): New variable.
* gnu: pies: Update to 1.3.Ludovic Courtès2016-10-04
| | | | | * gnu/packages/admin.scm (pies): Update to 1.3. [arguments]: New field.
* gnu: global: Update to 6.5.5.Ludovic Courtès2016-10-04
| | | | * gnu/packages/code.scm (global): Update to 6.5.5.
* gnu: gsl: Update to 2.2.1.Ludovic Courtès2016-10-04
| | | | * gnu/packages/maths.scm (gsl): Update to 2.2.1.
* gnu: direvent: Update to 5.1.Ludovic Courtès2016-10-04
| | | | | | * gnu/packages/admin.scm (direvent): Update to 5.1. [arguments]: Augment 'patch-/bin/sh' phase to patch 'progman.c' and 'testsuite'.
* gnu: gnu-c-manual: Update to 0.2.5.Ludovic Courtès2016-10-04
| | | | * gnu/packages/gcc.scm (gnu-c-manual): Update to 0.2.5.
* gnu: rush: Update to 1.8.Ludovic Courtès2016-10-04
| | | | | | | | * gnu/packages/rush.scm (rush): Update to 1.8. [source]: Remove 'patches'. * gnu/packages/patches/cpio-gets-undeclared.patch, gnu/packages/patches/rush-CVE-2013-6889.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* Set Emacs config variable sentence-end-double-space.Hartmut Goebel2016-10-04
| | | | | | | | | Users using a non-English environment may have set this to `nil´, which leads to fill-paragraph removing the second space. * .dir-locals.el: Set sentence-end-double-space to true. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: cryptsetup: Update to 1.7.2.Leo Famulari2016-10-04
| | | | | | * gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.2. [source]: Use kernel mirror. [home-page]: Update URL.
* gnu: metabat: Update to 0.32.4-1.cbdca756.Ben Woodcroft2016-10-04
| | | | | | * gnu/packages/bioinformatics.scm (metabat): Update to 0.32.4-1.cbdca756. * gnu/packages/patches/metabat-remove-compilation-date.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: fish: Do not use the bundled PCRE2.Ludovic Courtès2016-10-04
| | | | * gnu/packages/shells.scm (fish)[inputs]: Add PCRE2.
* gnu: fish: Add input bc.Arun Isaac2016-10-04
| | | | | | | | Fixes <http://bugs.gnu.org/24433>. * gnu/packages/shells.scm (fish)[inputs]: Add bc. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: warzone2100: Update to 3.2.1.Ricardo Wurmus2016-10-04
| | | | | | | | * gnu/packages/games.scm (warzone2100): Update to 3.2.1. [arguments]: Remove phase "set-sdl-paths", add phase "link-tests-with-qt", add phase "remove-reference-to-missing-file". [inputs]: Replace "qt-4" with "qt", replace "sdl-union" with "sdl2", add "openssl".
* gnu: ruby-nokogumbo: Move "build-gemspec" phase after "unpack".Ricardo Wurmus2016-10-04
| | | | | * gnu/packages/ruby.scm (ruby-nokogumbo)[arguments]: Move "build-gemspec" phase after "unpack".
* gnu: python-pathlib: Disable tests.Ricardo Wurmus2016-10-04
| | | | * gnu/packages/python.scm (python-pathlib)[arguments]: Disable tests.
* gnu: ghmm: Run tests after install.Ricardo Wurmus2016-10-04
| | | | | * gnu/packages/machine-learning.scm (ghmm)[arguments]: Move "check" phase after "install"; add phase "fix-PYTHONPATH".
* gnu: raincat: Add missing input.Ricardo Wurmus2016-10-04
| | | | * gnu/packages/games.scm (raincat)[inputs]: Add freeglut.
* gnu: supertux: Update to 0.5.0.Ricardo Wurmus2016-10-04
| | | | | * gnu/packages/games.scm (supertux): Update to 0.5.0. [arguments]: Add flag to disable static boost libraries.
* gnu: parallel: Update to 20160922.Leo Famulari2016-10-03
| | | | * gnu/packages/parallel.scm (parallel): Update to 20160922.
* gnu: linux-libre: Update to 4.8.Mark H Weaver2016-10-03
| | | | | | | | | * gnu/packages/linux.scm (linux-libre): Update to 4.8. * gnu/packages/linux-libre-4.7-x86_64.conf, gnu/packages/linux-libre-4.7-i686.conf: Delete files. * gnu/packages/linux-libre-4.8-x86_64.conf, gnu/packages/linux-libre-4.8-i686.conf: New files. * Makefile.am (KCONFIGS): Update accordingly.
* gnu: nss: Increase build timeout to 60 hours.Mark H Weaver2016-10-03
| | | | | * gnu/packages/gnuzilla.scm (nss)[properties]: Increase build timeout to 60 hours.
* gnu: gnunet: Add inputs.ng02016-10-03
| | | | | | | | | * gnu/packages/gnunet.scm (gnunet)[inputs]: Add perl, jansson, nss, gmp, bluez, glib, libogg. [native-inputs]: Move python-2 from here ... [inputs]: ... to here. Signed-off-by: Leo Famulari <leo@famulari.name>
* lint: 'cve' checker reports the replacement's vulnerabilities.Ludovic Courtès2016-10-03
| | | | | | | | | | | Before, 'guix lint -c cve' would report the vulnerabilities of the original package while pretending they are the vulnerabilities of the replacement. * guix/scripts/lint.scm (check-vulnerabilities): Consider the package replacement before calling 'package-vulnerabilities'. * tests/lint.scm ("cve: vulnerability fixed in replacement version"): New test.
* gnu: gctp: 'license' field now has a <license> value.Ludovic Courtès2016-10-03
| | | | * gnu/packages/maths.scm (gctp)[license]: Change to a <license> record.
* gnu: libgcrypt@1.7: Replacement now has an accurate 'version' field.Ludovic Courtès2016-10-03
| | | | * gnu/packages/gnupg.scm (libgcrypt-1.7.3)[version]: New field.
* gnu: openssl@1.0: Replacement now has an accurate 'version' field.Ludovic Courtès2016-10-03
| | | | * gnu/packages/tls.scm (openssl-1.0.2j)[name, version]: New fields.
* grafts: Allow the replacement to have a different name.Ludovic Courtès2016-10-03
| | | | | | | | | | | | | | * guix/build/graft.scm (replace-store-references): REPLACEMENT is now the full string, not just the hash. (rewrite-directory)[hash-mapping](valid-suffix?): Remove. (hash+suffix): Rename to... (hash+rest): ... this. Change to return the whole string as the second element of the list. Adjust 'match-lambda' expression accordingly; check whether the string length of the origin and replacement match. * tests/grafts.scm ("graft-derivation, grafted item uses a different name"): New test. * doc/guix.texi (Security Updates): Update sentence on the name/version restriction.
* gnu: libarchive: Fix several security issues.Leo Famulari2016-10-03
| | | | | | | | | | * gnu/packages/backup.scm (libarchive)[replacement]: New field. (libarchive/fixed): New variable. * gnu/packages/patches/libarchive-7zip-heap-overflow.patch, gnu/packages/patches/libarchive-fix-symlink-check.patch, gnu/packages/patches/libarchive-fix-filesystem-attacks.patch, gnu/packages/patches/libarchive-safe_fprintf-buffer-overflow.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them.
* gnu: perl-dbd-mysql: Update to 4.037 [fixes CVE-2016-1246].Leo Famulari2016-10-03
| | | | * gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.037.
* tests: Adjust 'guix build -S' test for source-less packages.Ludovic Courtès2016-10-03
| | | | | | | This is a followup to 8a54c0ec694ad6e22b155d167552b8fd0914e82d. * tests/guix-build.sh: Allow 'guix build -S' to succeed with source-less packages. Check that the result is the empty string.
* tests: ssh: Add Dropbear test.Ludovic Courtès2016-10-03
| | | | | | * gnu/tests/ssh.scm (run-ssh-test): Try authenticating with 'userauth-none!' when 'userauth-password!' fails. (%test-dropbear): New variable.
* tests: ssh: Generalize.Ludovic Courtès2016-10-03
| | | | | | | | | | | * gnu/tests/ssh.scm (%openssh-os): Rename to... (%base-os): ... this. [services]: Remove 'openssh-service-type' instance. (os-with-service): New procedure. (run-openssh-test): Rename to... (run-ssh-test): ... this. Add 'ssh-service' and 'pid-file' parameters. Use 'os-with-service' to add SSH-SERVICE to %BASE-OS. Honor PID-FILE. (%test-openssh): Adjust accordingly.
* services: rottlog: Add Rottlog to the global profile.Ludovic Courtès2016-10-03
| | | | | * gnu/services/admin.scm (rottlog-service-type): Extend PROFILE-SERVICE-TYPE.
* services: rottlog: Improve default weekly rotations.Ludovic Courtès2016-10-03
| | | | | | | | | * gnu/services/admin.scm (%rotated-files): Add "/var/log/maillog". (syslog-rotation-config): Change parameter to 'files'. Return a string-append gexp for all of FILES. (simple-rotation-config): Remove unnecessary 'postrotate' and 'endscript'. (%default-rotations): Adjust accordingly.
* tests: Add 'openssh-service-type' test.Ludovic Courtès2016-10-03
| | | | | * gnu/tests/ssh.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* services: openssh-service-type: Expose 'openssh-configuration'.Ludovic Courtès2016-10-03
| | | | | | | | * gnu/services/ssh.scm (<openssh-configuration>): Add default values. [pubkey-authentication?]: Rename to... [public-key-authentication?]: ... this. (openssh-service): Remove. * doc/guix.texi (Networking Services): Adjust accordingly.
* services: Add rottlog.Jan Nieuwenhuizen2016-10-03
| | | | | | | | * gnu/services/admin.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (Log Rotation): New node. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: ghc-process: Replace reference to /bin/sh.Ricardo Wurmus2016-10-02
| | | | | * gnu/packages/haskell.scm (ghc-process)[arguments]: Add phases "patch-reference-to-/bin/sh" to replace reference to /bin/sh.
* gnu: Do not propagate inputs in haskell.scm.Ricardo Wurmus2016-10-02
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/haskell.scm (ghc-streaming-commons)[propagated-inputs]: Move ghc-random... [inputs]: ...to here; remove ghc-async, add ghc-directory, add ghc-transformers; move ghc-quickcheck, ghc-hspec... [native-inputs]: ...to here; add hspec-discover. (ghc-test-framework)[propagated-inputs]: Move all from here... [inputs]: ...to here; move ghc-hunit and ghc-quickcheck... [native-inputs]: ...to here. (ghc-attoparsec)[propagated-inputs]: Move ghc-scientific... [inputs]: ...to here; move ghc-quickcheck, ghc-quickcheck-unicode, ghc-test-framework, ghc-test-framework-quickcheck2, ghc-vector... [native-inputs]: ...to here. (ghc-zip-archive)[propagated-inputs]: Move all inputs from here... [inputs]: ...to here; move ghc-hunit from here... [native-inputs]: ...to here. (ghc-network-uri)[inputs]: Add ghc-parsec; move ghc-hunit from here... [native-inputs]: ...to here. [propagated-inputs]: Remove. (ghc-wai)[propagated-inputs]: Move all inputs from here... [inputs]: ...to here; move ghc-quickcheck, ghc-hunit, and ghc-hspec from here... [native-inputs]: ...to here. Add hspec-discover. (ghc-wai-extra)[propagated-inputs]: Remove ghc-hspec and ghc-hunit; move all other inputs from here... [inputs]: ...to here. [native-inputs]: Add hspec-discover, ghc-hspec, and ghc-hunit. (ghc-resourcet, ghc-xss-sanitize, ghc-parsec, ghc-vector, ghc-http, ghc-base-compat, ghc-base-orphans, ghc-word8)[inputs]: Move all inputs from here... [native-inputs]: ...to here. (ghc-haddock-library, ghc-hspec-contrib, ghc-base-compat, ghc-base-orphans, ghc-fast-logger, ghc-word8, ghc-aeson-qq, ghc-logging-facade, ghc-mockery, ghc-yaml, ghc-hslua)[native-inputs]: Add hspec-discover. (ghc-fast-logger)[inputs]: Move ghc-hspec from here... [native-inputs]: ...to here. (ghc-data-default, ghc-data-default-instances-base, ghc-data-default-instances-containers, ghc-data-default-instances-dlist, ghc-haddock-api, ghc-happy, ghc-haskell-src-exts, ghc-resourcet, ghc-xss-sanitize, ghc-sdl-mixer, ghc-sdl-image, ghc-glut, ghc-gluraw, ghc-opengl, cpphs, ghc-old-time, ghc-data-default-instances-old-locale, cabal-install, ghc-x11, ghc-x11-xft, ghc-hashable, ghc-test-framework-hunit, ghc-test-framework, ghc-tf-random, ghc-transformers-base, ghc-unix-time, ghc-http-types, ghc-iproute, ghc-regex-base, ghc-regex-posix, ghc-regex-tdfa-rc, ghc-parsers, ghc-trifecta, ghc-distributive, ghc-comonad, ghc-polyparse, ghc-profunctors, ghc-reducers, ghc-xml, ghc-exceptions, ghc-temporary, ghc-temporary-rc, ghc-smallcheck, ghc-tasty-ant-xml, ghc-quickcheck-instances, ghc-quickcheck, ghc-case-insensitive, ghc-chasingbottoms, ghc-unordererd-containers, ghc-uniplate, ghc-ansi-wl-pprint, ghc-parsec, ghc-vector, ghc-vector-binary-instances, ghc-http, ghc-hspec, ghc-hspec-contrib, ghc-hspec-core, ghc-hspec-meta, ghc-vault, ghc-monad-control, ghc-blaze-builder, ghc-blaze-markup, ghc-blaze-html, ghc-async, ghc-optparse-applicative, ghc-charset, ghc-void, ghc-kan-extensions, ghc-statevar, ghc-lens, ghc-cheapskate, ghc-semigroupoids, ghc-contrvariant, ghc-semigroups, ghc-free, ghc-adjunctions, ghc-fast-logger, ghc-doctest, ghc-lifted-base, ghc-tasty-quickcheck, ghc-tasty-golden, ghc-tasty, ghc-cookie, ghc-scientific, ghc-aeson, ghc-wai-logger, ghc-pandoc-types, ghc-texmath, ghc-regex-pcre-builtin, ghc-highlighting-kate, ghc-cmark, ghc-enclosed-exceptions, ghc-th-lift, ghc-th-expand-syns, ghc-th-reify-many, ghc-th-orphans, ghc-haskell-src-meta, ghc-aeson-qq, ghc-conduit, ghc-mockery, ghc-yaml, ghc-filemanip, ghc-juicypixels, ghc-hslua, ghc-mime-types, ghc-http-client, ghc-hourglass, ghc-pem, ghc-asn1-types, ghc-asn1-encoding, ghc-asn1-parse, ghc-tasty-kat, ghc-cryptonite, ghc-x509, ghc-x509-store, ghc-x509-validation, ghc-x509-system, ghc-tls, ghc-socks, ghc-connection, ghc-http-client-tls, ghc-pandoc)[propagated-inputs]: Move inputs from here... [inputs]: ...to here.
* gnu: r-plotly: Update to 4.5.2.Ricardo Wurmus2016-10-02
| | | | | | * gnu/packages/statistics.scm (r-plotly): Update to 4.5.2. [propagated-inputs]: Remove r-plyr; remove r-viridis; add r-dplyr; add r-lazyeval; add r-purrr; add r-tibble; add r-viridislite.
* gnu: Add r-purrr.Ricardo Wurmus2016-10-02
| | | | * gnu/packages/statistics.scm (r-purrr): New variable.
* gnu: Add r-viridislite.Ricardo Wurmus2016-10-02
| | | | * gnu/packages/statistics.scm (r-viridislite): New variable.
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