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* gnu: perl-b-hooks-endofscope: Update to 0.24.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/perl.scm (perl-b-hooks-endofscope): Update to 0.24.
* gnu: perl-file-sharedir-install: Update to 0.13.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/perl.scm (perl-file-sharedir-install): Update to 0.13.
* gnu: perl-test-notabs: Update to 2.02.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/perl-check.scm (perl-test-notabs): Update to 2.02.
* gnu: python-simplejson: Update to 3.14.0.Tobias Geerinckx-Rice2018-04-27
| | | | * gnu/packages/python.scm (python-simplejson): Update to 3.14.0.
* gnu: python2-ndg-httpsclient: Fix build.Tobias Geerinckx-Rice2018-04-27
| | | | | | | | This might be a follow-up to a39cc016329f1f490ac7629fa81c9b686e7b0f4e from 2016, which would be neat. * gnu/packages/python-web.scm (python2-ndg-httpsclient)[arguments]: Use SUBSTITUTE-KEYWORD-ARGUMENTS to still skip tests.
* gnu: paperkey: Update to 1.5.Christopher Lemmer Webber2018-04-26
| | | | * gnu/packages/gnupg.scm (paperkey): Update to 1.5.
* gnu: bedops: Update to 2.4.33.Roel Janssen2018-04-27
| | | | * gnu/packages/bioinformatics.scm (bedops): Update to 2.4.33.
* gnu: samtools: Update to 1.8.Roel Janssen2018-04-27
| | | | * gnu/packages/bioinformatics.scm (samtools): Update to 1.8.
* gnu: bcftools: Update to 1.8.Roel Janssen2018-04-27
| | | | | | * gnu/packages/bioinformatics.scm (bcftools): Update to 1.8. * gnu/local.mk: Remove patch. * gnu/packages/patches/bcftools-regidx-unsigned-char.patch: Remove file.
* gnu: htslib: Update to 1.8.Roel Janssen2018-04-27
| | | | * gnu/packages/bioinformatics.scm (htslib): Update to 1.8.
* gnu: PackageKit: Update to 1.1.10 [fixes CVE-2018-1106].Leo Famulari2018-04-26
| | | | * gnu/packages/freedesktop.scm (packagekit): Update to 1.1.10.
* gnu: emacs-magit-popup: Update to 2.12.3.Alex Kost2018-04-26
| | | | * gnu/packages/emacs.scm (emacs-magit-popup): Update to 2.12.3.
* gnu: emacs-with-editor: Update to 2.7.2.Alex Kost2018-04-26
| | | | * gnu/packages/emacs.scm (emacs-with-editor): Update to 2.7.2.
* gnu: geiser: Update to 0.10.Alex Kost2018-04-26
| | | | * gnu/packages/emacs.scm (geiser): Update to 0.10.
* gnu: python-josepy: Update to 1.1.0.Leo Famulari2018-04-26
| | | | | * gnu/packages/python-crypto.scm (python-josepy, python2-josepy): Update to 1.1.0.
* gnu: python-qrcode: Update to 6.0.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/python.scm (python-qrcode): Update to 6.0.
* gnu: python2-pathlib2: Update to 2.3.2.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/python.scm (python2-pathlib2): Update to 2.3.2.
* gnu: python-rst.linker: Update to 1.9.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/python.scm (python-rst.linker): Update to 1.9.
* gnu: python-sphinx@1.6: Update to 1.6.4.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/python.scm (python-sphinx-1.6): Update to 1.6.4.
* gnu: python-ndg-httpsclient: Update to 0.5.0.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/python-web.scm (python-ndg-httpsclient): Update to 0.5.0.
* gnu: r-ztable: Update to 0.1.8.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/statistics.scm (r-ztable): Update to 0.1.8.
* gnu: r-sn: Update to 1.5-2.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/statistics.scm (r-sn): Update to 1.5-2.
* gnu: r-sourcetools: Update to 0.1.7.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/statistics.scm (r-sourcetools): Update to 0.1.7.
* gnu: python-html5-parser: Update to 0.4.5.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/python-web.scm (python-html5-parser): Update to 0.4.5.
* gnu: mg: Update to 20180408.Tobias Geerinckx-Rice2018-04-26
| | | | | * gnu/packages/text-editors.scm (mg): Update to 20180408. [source]: Switch from discontinued proper releases to a git tag.
* gnu: mg: Find ncurses through pkg-config.Tobias Geerinckx-Rice2018-04-26
| | | | | * gnu/packages/text-editors.scm (mg)[arguments]: Remove explicit ‘CURSES_LIBS=-lncurses’ setting from #:make-flags.
* gnu: fio: Use INVOKE.Tobias Geerinckx-Rice2018-04-26
| | | | | * gnu/packages/benchmark.scm (fio)[arguments]: Substitute INVOKE for SYSTEM* and end phase with explicit #t.
* gnu: ghostwriter: Update to 1.6.2.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/text-editors.scm (ghostwriter): Update to 1.6.2.
* gnu: youtube-viewer: Update to 3.3.4.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/video.scm (youtube-viewer): Update to 3.3.4.
* gnu: openvpn: Update to 2.4.6.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/vpn.scm (openvpn): Update to 2.4.6.
* gnu: perl-text-glob: Update to 0.11.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/perl.scm (perl-text-glob): Update to 0.11.
* gnu: perl-task-weaken: Update to 1.06.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/perl.scm (perl-task-weaken): Update to 1.06.
* gnu: perl-module-find: Update to 0.13.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/perl.scm (perl-module-find): Update to 0.13.
* gnu: perl-mime-types: Update to 2.17.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/perl.scm (perl-mime-types): Update to 2.17.
* gnu: perl-file-sharedir-install: Update to 0.12.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/perl.scm (perl-file-sharedir-install): Update to 0.12.
* gnu: perl-devel-overloadinfo: Update to 0.005.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/perl.scm (perl-devel-overloadinfo): Update to 0.005.
* gnu: perl-class-inspector: Update to 1.32.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/perl.scm (perl-class-inspector): Update to 1.32.
* gnu: perl-file-find-rule: Update to 0.34.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/perl.scm (perl-file-find-rule): Update to 0.34.
* gnu: perl-error: Update to 0.17025.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/perl-.scm (perl-error): Update to 0.17025.
* gnu: perl-test-simple: Update to 1.302136.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/perl-check.scm (perl-test-simple): Update to 1.302136.
* gnu: perl-test-output: Update to 1.031.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/perl-check.scm (perl-test-output): Update to 1.031.
* gnu: perl-test-differences: Update to 0.64.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/perl-check.scm (perl-test-differences): Update to 0.64.
* gnu: perl-test-pod: Update to 1.52.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/perl-check.scm (perl-test-pod): Update to 1.52.
* gnu: perl-test-base: Update to 0.89.Tobias Geerinckx-Rice2018-04-26
| | | | * gnu/packages/perl-check.scm (perl-test-base): Update to 0.89.
* gnu: zsh: Update to 5.5.1.Leo Famulari2018-04-26
| | | | | | | | * gnu/packages/shells.scm (zsh): Update to 5.5.1. [source]: Remove obsolete patches. * gnu/packages/patches/zsh-CVE-2018-7548.patch, gnu/packages/patches/zsh-CVE-2018-7549.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: Add libpfm4.Rouby Pierre-Antoine2018-04-26
| | | | | | * gnu/packages/linux.scm (libpfm4): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add psm2.Rouby Pierre-Antoine2018-04-26
| | | | | | * gnu/packages/linux.scm (psm2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: perl@5.26.2: Don't export variable.Marius Bakke2018-04-26
| | | | | | | This prevents it from ending up in user profiles, which would fail due to wrong search paths as reported in <https://bugs.gnu.org/31216#43>. * gnu/packages/perl.scm (perl-5.26.2): Use DEFINE instead of DEFINE-PUBLIC.
* gnu: qemu: Enable GTK3 frontend.Rutger Helling2018-04-26
| | | | | | | | * gnu/packages/virtualization.scm (qemu)[native-inputs]: Add "gettext" to native-inputs. [inputs]: Add "gtk+" to inputs. * gnu/packages/virtualization.scm (qemu-minimal)[native-inputs]: Remove "gettext" from inherited inputs. [inputs]: Remove "gtk+" from inherited inputs.
* gnu: qemu: Build with Python 3 and SDL2 support.Rutger Helling2018-04-26
| | | | | | | | | | | | | * gnu/packages/bootloaders.scm (qemu-minimal-2.10): Remove variable. * gnu/packages/virtualization.scm (qemu)[inputs]: Use sdl2 instead of sdl. [native-inputs]: Use python-wrapper instead of python@2. * gnu/packages/virtualization.scm (qemu-minimal)[inputs]: Remove sdl2 instead of sdl from inherited packages. * gnu/packages/virtualization.scm (qemu-minimal-2.10): Add variable. [native-inputs]: Remove python-wrapper from inherited packages and use python@2 instead. * gnu/packages/debug.scm (american-fuzzy-lop): Inherit from moved hidden-package qemu-minimal-2.10.
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