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* gnu: hwloc: Update to 2.1.0.Ludovic Courtès2019-11-15
| | | | | | | * gnu/packages/mpi.scm (hwloc-2.0): Rename to... (hwloc-2): ... this. Update to 2.1.0 (hwloc-2.0): Define as deprecated. * gnu/packages/opencl.scm (pocl)[inputs]: Adjust accordingly.
* gnu: slurm: Build shared libraries only.Ludovic Courtès2019-11-15
| | | | * gnu/packages/parallel.scm (slurm)[arguments]: Pass "--disable-static".
* gnu: slurm: Update to 19.05.3-2.Ludovic Courtès2019-11-15
| | | | | | | | * gnu/packages/parallel.scm (slurm): Update to 19.05.3-2. [source](snippet): Keep "contribs/mpi" and its reference in 'Makefile.am'. [inputs]: Remove OPENSSL. [arguments]: Remove "--with-ssl". Add 'install-libpmi' phase.
* gnu: Add Intel MPI Benchmarks.Ludovic Courtès2019-11-15
| | | | * gnu/packages/mpi.scm (intel-mpi-benchmarks): New variable.
* gnu: rdma-core: Update to 26.0.Ludovic Courtès2019-11-15
| | | | | | * gnu/packages/linux.scm (rdma-core): Update to 26.0. [arguments]: Add "-DRST2MAN_EXECUTABLE=..." to #:configure-flags. [native-inputs]: Add PYTHON-DOCUTILS.
* gnu: rdma-core: Use the "write" ioctl mode.Ludovic Courtès2019-11-15
| | | | | * gnu/packages/linux.scm (rdma-core)[arguments]: Add "-DIOCTL_MODE=write" to #:configure-flags.
* gnu: openmpi: Pass explicit "--with-*" configure flags.Ludovic Courtès2019-11-15
| | | | | * gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-ucx", "--with-psm", and "--with-psm2".
* gnu: ucx: Do not install static libraries.Ludovic Courtès2019-11-15
| | | | | * gnu/packages/fabric-management.scm (ucx)[arguments]: Pass "--disable-static".
* gnu: ucx: Enable InfiniBand support through Verbs.Ludovic Courtès2019-11-15
| | | | | | | | Until now, InfiniBand support was missing, as reported by "ucx_info -d" on a machine with InfiniBand networking. * gnu/packages/fabric-management.scm (ucx)[arguments]: Build with "--with-verbs".
* gnu: git-annex: Update to 7.20191114.Kyle Meyer2019-11-15
| | | | | | * gnu/packages/haskell-apps.scm (git-annex): Update to 7.20191114. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
* gnu: rtmidi: Update to 4.0.0.Pierre Langlois2019-11-15
| | | | | | | | | | | | | * gnu/packages/audio.scm (rtmidi): Update to 4.0.0. [source]: Download tarball from upstream URL rather than the powertab github fork. [arguments]: Enable tests. Remove 'build and 'install phases and add a new 'noconfigure phase to prevent the bootstrap script from invoking configure. [home-page]: Update homepage to upstream URL. * gnu/packages/music.scm (powertabeditor)[arguments]: Add phase that substitutes the rtmidi #include directive to find the header. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
* gnu: freecad: Update to 0.18.4.John Soo2019-11-15
| | | | | | * gnu/packages/engineering.scm (freecad): Update to 0.18.4. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
* make-bootstrap: Adjust copied linux headers.Efraim Flashner2019-11-15
| | | | | * guix/build/make-bootstrap.scm (copy-linux-headers): Remove header file 'a.out.h' is no longer part of the linux kernel headers.
* gnu: emacs-flycheck-cpplint: Set cpplint path.Mathieu Othacehe2019-11-15
| | | | | * gnu/packages/emacs-xyz.scm (emacs-flycheck-cpplint)[inputs]: Add cpplint. [arguments]: Add a set-cpplint-path phase to set the path of cpplint.
* gnu: Add cpplint.Mathieu Othacehe2019-11-15
| | | | * gnu/packages/cpp.scm (cpplint): New variable.
* gnu: fluidsynth: Update to 2.0.9.Tobias Geerinckx-Rice2019-11-14
| | | | * gnu/packages/audio.scm (fluidsynth): Update to 2.0.9.
* gnu: perl-type-tiny: Update to 1.006000.Tobias Geerinckx-Rice2019-11-14
| | | | * gnu/packages/perl.scm (perl-type-tiny): Update to 1.006000.
* gnu: msitools: Update to 0.100.Tobias Geerinckx-Rice2019-11-14
| | | | * gnu/packages/package-management.scm (msitools): Update to 0.100.
* gnu: perl-mail-dkim: Update to 0.58.Tobias Geerinckx-Rice2019-11-14
| | | | * gnu/packages/mail.scm (perl-mail-dkim): Update to 0.58.
* gnu: Add m2-planet.Jan Nieuwenhuizen2019-11-14
| | | | * gnu/packages/mes.scm (m2-planet): New variable.
* gnu: Add emacs-helm-fish-completion.Pierre Neidhardt2019-11-14
| | | | * gnu/packages/emacs-xyz.scm (emacs-helm-fish-completion): New variable.
* gnu: r-gprofiler: Update to 0.7.0.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.7.0.
* gnu: r-hexbin: Update to 1.28.0.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/statistics.scm (r-hexbin): Update to 1.28.0.
* gnu: r-r-oo: Update to 1.23.0.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/statistics.scm (r-r-oo): Update to 1.23.0.
* gnu: r-glmnet: Update to 3.0.Ricardo Wurmus2019-11-14
| | | | | | | * gnu/packages/statistics.scm (r-glmnet): Update to 3.0. [inputs]: Move gfortran from here... [native-inputs]: ...to here. [propagated-inputs]: Add r-shape.
* gnu: r-dt: Update to 0.10.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/statistics.scm (r-dt): Update to 0.10.
* gnu: r-rmarkdown: Update to 1.17.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/statistics.scm (r-rmarkdown): Update to 1.17.
* gnu: r-hms: Update to 0.5.2.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/statistics.scm (r-hms): Update to 0.5.2.
* gnu: r-roxygen2: Update to 7.0.0.Ricardo Wurmus2019-11-14
| | | | | * gnu/packages/statistics.scm (r-roxygen2): Update to 7.0.0. [propagated-inputs]: Add r-rlang.
* gnu: r-r6: Update to 2.4.1.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/statistics.scm (r-r6): Update to 2.4.1.
* gnu: r-testthat: Update to 2.3.0.Ricardo Wurmus2019-11-14
| | | | | * gnu/packages/statistics.scm (r-testthat): Update to 2.3.0. [propagated-inputs]: Add r-ellipsis and r-pkgload.
* gnu: r-knitr: Update to 1.26.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/statistics.scm (r-knitr): Update to 1.26.
* gnu: r-survival: Update to 3.1-7.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/statistics.scm (r-survival): Update to 3.1-7.
* gnu: r-farver: Update to 2.0.1.Ricardo Wurmus2019-11-14
| | | | | * gnu/packages/cran.scm (r-farver): Update to 2.0.1. [propagated-inputs]: Remove r-rcpp.
* gnu: r-ggeffects: Update to 0.13.0.Ricardo Wurmus2019-11-14
| | | | | * gnu/packages/cran.scm (r-ggeffects): Update to 0.13.0. [propagated-inputs]: Remove r-scales.
* gnu: r-learnr: Update to 0.10.0.Ricardo Wurmus2019-11-14
| | | | | * gnu/packages/cran.scm (r-learnr): Update to 0.10.0. [propagated-inputs]: Add r-checkmate, r-ellipsis, and r-renv.
* gnu: r-ggfortify: Update to 0.4.8.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/cran.scm (r-ggfortify): Update to 0.4.8.
* gnu: r-kernlab: Update to 0.9-29.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/cran.scm (r-kernlab): Update to 0.9-29.
* gnu: r-bookdown: Update to 0.15.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/cran.scm (r-bookdown): Update to 0.15.
* gnu: r-future: Update to 1.15.0.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/cran.scm (r-future): Update to 1.15.0.
* gnu: r-rbamtools: Update to 2.16.17.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/cran.scm (r-rbamtools): Update to 2.16.17.
* gnu: r-fields: Update to 10.0.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/cran.scm (r-fields): Update to 10.0.
* gnu: r-spam: Update to 2.4-0.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/cran.scm (r-spam): Update to 2.4-0.
* gnu: r-rcppannoy: Update to 0.0.14.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.14.
* gnu: r-rvcheck: Update to 0.1.6.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/cran.scm (r-rvcheck): Update to 0.1.6.
* gnu: r-rootsolve: Update to 1.8.1.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/cran.scm (r-rootsolve): Update to 1.8.1.
* gnu: r-flextable: Update to 0.5.6.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/cran.scm (r-flextable): Update to 0.5.6.
* gnu: r-officer: Update to 0.3.6.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/cran.scm (r-officer): Update to 0.3.6.
* gnu: r-rjags: Update to 4-10.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/cran.scm (r-rjags): Update to 4-10.
* gnu: r-ggpubr: Update to 0.2.4.Ricardo Wurmus2019-11-14
| | | | * gnu/packages/cran.scm (r-ggpubr): Update to 0.2.4.
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