| Commit message (Expand) | Author | Age |
|---|
| * | gexp: Add '=>' syntax to import computed modules.•••* guix/gexp.scm (imported-files)[file-pair]: Add case for pairs where
the cdr is not a string.
(imported-modules): Support '=>' syntax in MODULES.
* tests/gexp.scm ("imported-files with file-like objects")
("gexp->derivation & with-imported-module & computed module"): New tests.
* doc/guix.texi (G-Expressions): Document '=>' syntax for
'with-imported-modules'.
| Ludovic Courtès | 2017-03-16 |
| * | utils: Move base16 procedures to (guix base16).•••* guix/utils.scm (bytevector->base16-string, base16-string->bytevector):
Move to...
* guix/base16.scm: ... here. New file.
* tests/utils.scm ("bytevector->base16-string->bytevector"): Move to...
* tests/base16.scm: ... here. New file.
* Makefile.am (MODULES): Add guix/base16.scm.
(SCM_TESTS): Add tests/base16.scm.
* build-aux/download.scm, guix/derivations.scm,
guix/docker.scm, guix/import/snix.scm, guix/pk-crypto.scm,
guix/scripts/authenticate.scm, guix/scripts/download.scm,
guix/scripts/hash.scm, guix/store.scm, tests/hash.scm,
tests/pk-crypto.scm: Adjust imports accordingly.
| Ludovic Courtès | 2017-03-16 |
| * | gnu: password-store: Fix compatibility with GnuPG 2.1.19.•••* gnu/packages/patches/password-store-gnupg-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (password-store)[source]: Use it.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
| Clément Lassieur | 2017-03-16 |
| * | gnu: Add r-seurat.•••* gnu/packages/bioinformatics.scm (r-seurat): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| Raoul Jean Pierre Bonnal | 2017-03-16 |
| * | gnu: sra-tools: Update to 2.8.2-1.•••* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.8.2-1.
[arguments]: Add DEFAULT_CRT and DEFAULT_KFG to make flags.
| Ricardo Wurmus | 2017-03-16 |
| * | gnu: ncbi-vdb: Install configuration files.•••* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add phase
"install-configuration-files".
| Ricardo Wurmus | 2017-03-16 |
| * | gnu: ncbi-vdb: Override search path for java-ngs.•••* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Patch "package.prl"
to ensure that java-ngs is found by the configure script; remove configure
flag "--with-ngs-java-prefix".
| Ricardo Wurmus | 2017-03-16 |
| * | gnu: ncbi-vdb: Use modify-phases syntax.•••* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use modify-phases
syntax.
| Ricardo Wurmus | 2017-03-16 |
| * | gnu: ncbi-vdb: Update to 2.8.2.•••* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.8.2.
| Ricardo Wurmus | 2017-03-16 |
| * | gnu: ngs-sdk: Update to 1.3.0.•••* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.3.0.
| Ricardo Wurmus | 2017-03-16 |
| * | gnu: Add pzstd.•••* gnu/packages/compression.scm (pzstd): New variable.
| Tobias Geerinckx-Rice | 2017-03-16 |
| * | gnu: Add zstd.•••* gnu/packages/compression.scm (zstd): New variable.
| Tobias Geerinckx-Rice | 2017-03-16 |
| * | gnu: python-publicsuffix2: Update to 2.20160818.•••* gnu/packages/python.scm (python-publicsuffix2): Update to 2.20160818.
| Tobias Geerinckx-Rice | 2017-03-16 |
| * | gnu: awscli: Update to 1.11.63.•••* gnu/packages/python.scm (awscli): Update to 1.11.63.
| Tobias Geerinckx-Rice | 2017-03-16 |
| * | gnu: python-botocore: Update to 1.5.26.•••* gnu/packages/python.scm (python-botocore): Update to 1.5.26.
| Tobias Geerinckx-Rice | 2017-03-16 |
| * | gnu: python-ptyprocess: Update to 0.5.1.•••* gnu/packages/python.scm (python-ptyprocess): Update to 0.5.1.
| Tobias Geerinckx-Rice | 2017-03-16 |
| * | gnu: Add prboom-plus.•••* gnu/packages/games.scm (prboom-plus): New variable.
| Kei Kebreau | 2017-03-15 |
| * | gnu: Add tftp-hpa.•••* gnu/packages/networking.scm (tftp-hpa): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
| Gábor Boskovits | 2017-03-15 |
| * | gnu: guile-next: Update to 2.2.0.•••* gnu/packages/guile.scm (guile-next): Update to 2.2.0.
| Andy Wingo | 2017-03-15 |
| * | gnu: profanity: Make the source URL version-agnostic.•••* gnu/packages/messaging.scm (profanity)[source]: Use (version) in the source
URL.
| Leo Famulari | 2017-03-15 |
| * | gnu: units: Update to 2.14.•••* gnu/packages/maths.scm (units): Update to 2.14.
| Tobias Geerinckx-Rice | 2017-03-15 |
| * | gnu: no-more-secrets: Update to 0.3.2.•••* gnu/packages/games.scm (no-more-secrets): Update to 0.3.2.
| Tobias Geerinckx-Rice | 2017-03-15 |
| * | gnu: mailutils: Update to 3.2.•••* gnu/packages/mail.scm (mailutils): Update to 3.2.
| Tobias Geerinckx-Rice | 2017-03-15 |
| * | gnu: Use INSTALL-FILE where appropriate.•••* gnu/packages/admin.scm (wpa-supplicant-minimal): Substitute the simpler
INSTALL-FILE for COPY-FILE when invoked with redundant arguments.
* gnu/packages/bioinformatics.scm (couger, aragorn, express-beta-diversity,
edirect, fasttree, rsem, samtools-0.1): Likewise.
* gnu/packages/code.scm (withershins): Likewise.
* gnu/packages/conky.scm (conky): Likewise.
* gnu/packages/debug.scm (delta, american-fuzzy-lop): Likewise.
* gnu/packages/emacs.scm (emacs-mit-scheme-doc): Likewise.
* gnu/packages/engineering.scm (librecad): Likewise.
| Tobias Geerinckx-Rice | 2017-03-15 |
| * | gnu: cryptsetup: Update to 1.7.4.•••* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.4.
| Tobias Geerinckx-Rice | 2017-03-15 |
| * | gnu: man-pages: Update to 4.10.•••* gnu/packages/man.scm (man-pages): Update to 4.10.
[home-page]: Use HTTPS.
| Tobias Geerinckx-Rice | 2017-03-15 |
| * | gnu: Add profanity.•••* gnu/packages/messaging.scm (profanity): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
| Mekeor Melire | 2017-03-15 |
| * | gnu: Add libstrophe.•••* gnu/packages/messaging.scm (libstrophe): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
| Mekeor Melire | 2017-03-15 |
| * | gnu: Add libmesode.•••* gnu/packages/messaging.scm (libmesode): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
| Mekeor Melire | 2017-03-15 |
| * | gnu: bitcoin-core: Update to 0.14.0.•••* gnu/packages/finance.scm (bitcoin-core): Update to 0.14.0.
| Leo Famulari | 2017-03-15 |
| * | build: Prefer Guile 2.2 over 2.0.•••* configure.ac: In 'GUILE_PKG', prefer 2.2 over 2.0. Remove warning
about 2.2 not being fully supported.
* doc/guix.texi (Requirements): Mention Guile 2.2.x.
| Ludovic Courtès | 2017-03-15 |
| * | tests: Expect less accurate location info in 2.2.0.•••* tests/guix-system.sh: Work around inaccurate location info in 2.2.0.
| Ludovic Courtès | 2017-03-15 |
| * | store: Adjust UTF-8 test to Guile 2.2.•••* tests/store.scm ("current-build-output-port, UTF-8 + garbage"): On
Guile 2.2, expect REPLACEMENT CHARACTER instead of '?'.
| Ludovic Courtès | 2017-03-15 |
| * | syscalls: Adjust 'clone' to Guile 2.2.•••Before that, something like:
(call-with-container
(lambda ()
(match (primitive-fork)
…)))
would hang in 'primitive-fork' as the child process (the one started in
the container) would try to pthread_join the finalization thread in
'stop_finalization_thread' in libguile, not knowing that this thread is
nonexistent.
* guix/build/syscalls.scm (%set-automatic-finalization-enabled?!): New
procedure.
(without-automatic-finalization): New macro.
(clone): Wrap PROC call in 'without-automatic-finalization'.
| Ludovic Courtès | 2017-03-15 |
| * | zlib: Don't rely on EBADF being ignored by 'fport_close'.•••In 2.2, 'fport_close' no longer swallows EBADF and instead raises a
'system-error' for this. This commit adjusts for 2.2.
* guix/zlib.scm (close-procedure): Remove.
(make-gzip-input-port): Use 'port->fdes' instead of 'fileno'.
Use 'gzclose' instead of 'close-procedure'.
(make-gzip-output-port): Likewise.
* tests/zlib.scm ("compression/decompression pipe"): Don't check whether
PARENT is closed using 'port-closed?'. Instead, use 'seek' on the
underlying FD and check for EBADF.
| Ludovic Courtès | 2017-03-15 |
| * | maint: Mention guix-patches@gnu.org in 'HACKING'.•••Fixes <http://bugs.gnu.org/25899>.
* HACKING: Mention guix-patches@gnu.org.
| Ludovic Courtès | 2017-03-15 |
| * | gnu: mariadb: Update to 10.1.22 [fixes CVE-2017-3302 and CVE-2017-3313].•••* gnu/packages/databases.scm (mariadb): Update to 10.1.22.
| Marius Bakke | 2017-03-15 |
| * | gnu: python-waf: Update to 1.9.8.•••* gnu/packages/python.scm (python-waf, python2-waf): Update to 1.9.8.
[home-page]: Use https.
| Efraim Flashner | 2017-03-15 |
| * | gnu: direnv: Update to 2.11.3.•••* gnu/packages/shellutils.scm (direnv): Update to 2.11.3.
| Tobias Geerinckx-Rice | 2017-03-15 |
| * | gnu: conky: Update to 1.10.6.•••* gnu/packages/conky.scm (conky): Update to 1.10.6.
| Tobias Geerinckx-Rice | 2017-03-15 |
| * | gnu: obs: Update to 18.0.1.•••* gnu/packages/video.scm (obs): Update to 18.0.1.
| Tobias Geerinckx-Rice | 2017-03-15 |
| * | gnu: youtube-dl: Update to 2017.03.15.•••* gnu/packages/video.scm (youtube-dl): Update to 2017.03.15.
| Tobias Geerinckx-Rice | 2017-03-15 |
| * | gnu: stress-make: Fix description.•••* gnu/packages/debug.scm (stress-make)[description]: Fix typo.
Avoid ambiguous use of ‘in order’.
| Tobias Geerinckx-Rice | 2017-03-15 |
| * | gnu: znc: Update to 1.6.5.•••* gnu/packages/messaging.scm (znc): Update to 1.6.5.
| Tobias Geerinckx-Rice | 2017-03-15 |
| * | gnu: grue-hunter: Correctly install documentation.•••* gnu/packages/games.scm (grue-hunter)[arguments]: Install and populate
‘/share/doc/grue-hunter’ as a directory, not a plain file.
| Tobias Geerinckx-Rice | 2017-03-15 |
| * | gnu: samtools: End installation phases with truth.•••* gnu/packages/bioinformatics.scm (samtools, samtools-0.1)[arguments]:
Return #T instead of the undefined results of COPY-FILE or INSTALL-FILE.
| Tobias Geerinckx-Rice | 2017-03-15 |
| * | gnu: w3m: Update to 0.5.3+git20170102 [security fixes].•••See 'NEWS' and 'ChangeLog' in the source distribution for more
information about the security-related bug fixes.
* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20170102.
| Leo Famulari | 2017-03-14 |
| * | Revert "gnu: gitolite: Fix shebangs in hooks."•••This change embedded store references in the shebangs of scripts that
were meant to be copied out of the store. Those scripts would break when
the interpreters expected by the shebangs were garbage collected.
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25966#28>
This reverts commit d0c16adb190c7244ee3ef1329cba78a015ae5d10.
| Leo Famulari | 2017-03-14 |
| * | pack: Add unit test.•••* guix/scripts/pack.scm (self-contained-tarball): Add #:tar option.
[build](tar-supports-sort?): New variable. Use it.
* tests/pack.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
| Ludovic Courtès | 2017-03-14 |
| * | pack: Use maximum compression; use '-n' for gzip.•••* guix/scripts/pack.scm (<compressor>)[tar-option]: Remove.
[command]: New field.
(%compressors): Provide complete commands. Use '-9' or equivalent for
each compressor; use '-n' for gzip.
(self-contained-tarball)[build]: Adjust accordingly.
| Ludovic Courtès | 2017-03-14 |