| Commit message (Collapse) | Author | Age |
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* gnu/packages/lsof.scm (lsof)[arguments]: Use 'install-file during the
'install phase.
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* gnu/packages/lsof.scm (lsof)[arguments]: Use 'modify-phases' syntax.
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* gnu/packages/lsof.scm (lsof)[source]: Add to mirror list.
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* gnu/packages/bioinformatics.scm (r-genomeinfodbdata)[source]: Use
source uri and not bioconductor-uri shortener.
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* gnu/packages/patches/freetype-CVE-2017-8105.patch,
gnu/packages/patches/freetype-CVE-2017-8287.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/fontutils.scm (freetype)[replacement]: New field.
(freetype/fixed): New variable.
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* gnu/packages/ocaml.scm (ocaml-qtest)[propagated-inputs]: Add ocaml-qcheck.
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* gnu/packages/ocaml.scm (ocaml-qcheck): New variable.
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Fixes <https://bugs.gnu.org/26692>.
* gnu/packages/python.scm (python-openid)[arguments]: Replace 'check phase.
[propagated-inputs]: Add python-defusedxml.
[native-inputs]: Add python-psycopg2, python-django.
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This is a followup to commit a01f15759a00503101baa23af87cbd6095a1fbd6.
* gnu/packages/cups.scm (ghostscript/cups)[replacement]: New field.
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* gnu/packages/linux.scm (radeontop): Update to 1.0.
[inputs]: Add libxcb.
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* gnu/packages/patches/ghostscript-CVE-2017-8291.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field.
(ghostscript/fixed): New variable.
(ghostscript-with-x)[replacement]: New field.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.04.28.
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* gnu/packages/games.scm (enigma): New variable.
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* gnu/packages/xml.scm (xerces-c): New variable.
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* gnu/packages/music.scm (schismtracker): Update to 20170420.
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Without this input, 'aws ec2 import-key-pair' doesn't work.
* gnu/packages/python.scm (awscli)[propagated-inputs]: Add python-pyyaml.
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* gnu/packages/qemu.scm (virt-manager): Update to 1.4.1.
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* gnu/packages/qemu.scm (python-libvirt, python2-libvirt): Update to 3.2.0.
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* gnu/packages/qemu.scm (libvirt-glib): Update to 1.0.0.
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* gnu/packages/qemu.scm (libvirt): Update to 3.2.0.
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* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.0.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.10.0.
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* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.2.0.
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* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.68.0.
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* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.14.0.
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* gnu/packages/bioinformatics.scm (r-vsn):
[source]: Update to 3.44.0,
[propagated-inputs]: Add r-hexbin.
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* gnu/packages/bioinformatics.scm (r-affy): Update to 1.54.0.
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* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.46.0.
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* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.10.0.
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* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.0.
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* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.0.
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* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.26.0.
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* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.20.0.
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* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.4.0.
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* gnu/packages/bioinformatics.scm (r-mutationalpatterns):
[source]: Update to 1.2.0,
[propagated-inputs]: Add r-bsgenome-hsapiens-1000genomes-hs37d5,
r-bsgenome-hsapiens-ucsc-hg19.
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* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.22.0.
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* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.20.0.
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* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.42.0.
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* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.8.0.
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* gnu/packages/bioinformatics.scm (r-impute): Update to 1.50.0.
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* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.44.0.
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* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.28.0.
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* gnu/packages/bioinformatics.scm (r-graph): Update to 1.54.0.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.0.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.0.
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* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.0.
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