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* gnu: gpgme: Add updater properties.Efraim Flashner2019-07-10
| | | | | * gnu/packages/gnupg.scm (gpgme)[properties]: New field. Add ftp-server, ftp-directory.
* gnu: npth: Add updater properties.Efraim Flashner2019-07-10
| | | | | * gnu/packages/gnupg.scm (npth)[properties]: New field. Add ftp-server, ftp-directory.
* gnu: gpa: Update to 0.10.0.Efraim Flashner2019-07-10
| | | | * gnu/packages/gnupg.scm (gpa): Update to 0.10.0.
* gnu: gpa: Add updater properties.Efraim Flashner2019-07-10
| | | | | * gnu/packages/gnupg.scm (gpa)[properties]: New field, add ftp-server, ftp-directory.
* gnu: postgresql@9: Update to 9.6.14 [fixes CVE-2018-1058, CVE-2019-9193]Efraim Flashner2019-07-10
| | | | * gnu/packages/databases.scm (postgresql@9): Update to 9.6.14.
* gnu: gnupg: Update to 2.2.17.Efraim Flashner2019-07-10
| | | | * gnu/packages/gnupg.scm (gnupg): Update to 2.2.17.
* gnu: icecat: Update to 60.8.0-guix1 [security fixes].Mark H Weaver2019-07-09
| | | | | | | | | | Includes fixes for CVE-2019-9811, CVE-2019-11709, CVE-2019-11711, CVE-2019-11712, CVE-2019-11713, CVE-2019-11715, CVE-2019-11717, CVE-2019-11719, CVE-2019-11729, and CVE-2019-11730. * gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.8.0-guix1. (icecat-source)[upstream-firefox-source]: Update hash. (icecat): Refresh some stale comments.
* gnu: ungoogled-chromium: Increase build timeout.Marius Bakke2019-07-10
| | | | | * gnu/packages/chromium.scm (ungoogled-chromium)[properties]: Set TIMEOUT to 40 hours.
* gnu: iproute2: Update to 5.2.0.Tobias Geerinckx-Rice2019-07-09
| | | | * gnu/packages/linux.scm (iproute): Update to 5.2.0.
* gnu: python-internetarchive: Update to 1.8.5.Oleg Pykhalov2019-07-09
| | | | | * gnu/packages/web.scm (python-internetarchive)[version]: Update to 1.8.5. [source](modules, snippet): New fields.
* gnu: wgetpaste: Update to 2.29.Efraim Flashner2019-07-09
| | | | | * gnu/packages/wget.scm (wgetpaste): Update to 2.29. [arguments]: Replace default paste service. Install license file.
* gnu: emacs-stumpwm-mode: Update to 0.0.1-1.8fbe071.Oleg Pykhalov2019-07-09
| | | | * gnu/packages/emacs-xyz.scm (emacs-stumpwm-mode): Update to 0.0.1-1.8fbe071.
* gnu: r-biocinstaller: Remove entirely.Tobias Geerinckx-Rice2019-07-09
| | | | | | | | This follows up on commit 0971f8bd884b6e92b77d9e12030cd58279699183, which led to ‘r-biocmanager: unbound variable’ errors. See <https://lists.gnu.org/archive/html/guix-devel/2019-07/msg00120.html>. * gnu/packages/bioinformatics.scm (r-biocinstaller): Remove variable.
* gnu: Add anonip.Hartmut Goebel2019-07-09
| | | | * gnu/packages/web.scm (anonip): New variable.
* gnu: snap: Update to 5.0.1.Nicolas Goaziou2019-07-09
| | | | * gnu/packages/education.scm (snap): Update to 5.0.1.
* gnu: musescore: Update to 3.2.3.Nicolas Goaziou2019-07-09
| | | | * gnu/packages/music.scm (musescore): Update to 3.2.3.
* gnu: libmicrohttpd: Update to 0.9.65.Tobias Geerinckx-Rice2019-07-09
| | | | * gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.65.
* gnu: grub: Build ‘grub-mount’.Tobias Geerinckx-Rice2019-07-09
| | | | | | This increases the closure size by a mere 1.8 MiB (0.8%). * gnu/packages/bootloaders.scm (grub)[inputs]: Add fuse.
* gnu: grub: Update to 2.04.Tobias Geerinckx-Rice2019-07-09
| | | | | | | | | | | * gnu/packages/bootloaders.scm (grub): Update to 2.04. [source]: Remove upstreamed patches. [arguments]: Don't require Python. Add a ‘disable-pixel-perfect-test’ phase to skip tests that fail with with our newer Unifont. * gnu/packages/patches/grub-efi-fat-serial-number.patch: Adjust context. * gnu/packages/patches/grub-binutils-compat.patch, gnu/packages/patches/grub-check-error-efibootmgr.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
* guix-install.sh: Don't initialise ~/.gnupg.Tobias Geerinckx-Rice2019-07-08
| | | | * etc/guix-install.sh (chk_gpg_keyring): Call gpg with ‘--dry-run’.
* guix-install.sh: Check for PGP key separately.Tobias Geerinckx-Rice2019-07-08
| | | | | | * etc/guix-install.sh (chk_gpg_keyring): New function to handle the public key check previously stuffed into chk_require. (main): Call it.
* discovery: Handle edge case in scheme-files when looking at symlinks.Christopher Baines2019-07-08
| | | | | | | | | | Previously, this code would cause crashes in Guix (running guix package -s for example) which could be experienced when Emacs creates temporary files in the gnu/packages/patches directory when a patch file has been edited, but not saved. * guix/discovery.scm (scheme-files): Add else clause to cond used when handling symlinks.
* guix-install.sh: Add missing ‘local’ declaration.Tobias Geerinckx-Rice2019-07-08
| | | | * etc/guix-install.sh (chk_require): Make $c local.
* guix-install.sh: Treat REQUIRE as the array it is.Tobias Geerinckx-Rice2019-07-08
| | | | | | | | Don't flatten it into a string only to split it again later. * etc/guix-install.sh (chk_require): Iterate over array elements, not string tokens. (main): Pass $REQUIRE as an array of arguments.
* scripts: environment: Add --no-cwd.Carl Dong2019-07-08
| | | | | | | | | | | | | * doc/guix.texi (Invoking guix environment): Add --no-cwd. * guix/scripts/environment.scm (show-help, %options): Add --no-cwd. (launch-environment/container): Add 'map-cwd?' param; only add mapping for cwd if #t. Only change to cwd within container if #t, otherwise home. (guix-environment): Error if --no-cwd without --container. Provide '(not no-cwd?)' to launch-environment/container as 'map-cwd?'. * tests/guix-environment.sh: Add test for no-cwd. Co-authored-by: Mike Gerwitz <mtg@gnu.org>
* scripts: environment: Only rewrite user-specified mappings.Carl Dong2019-07-08
| | | | | | * guix/scripts/environment.scm (launch-environment/container): Only apply override-user-mappings to user-mappings and cwd. Do not apply to network configuration mapping and inputs.
* gnu: Remove r-biocinstaller.Tobias Geerinckx-Rice2019-07-08
| | | | | | | It requires R < 3.6 and is no longer supported. * gnu/packages/bioinformatics.scm (r-biocinstaller): Define as deprecated in favour of r-biocmanager.
* gnu: r-xbioc: Update to 0.1.16-1.6ff0670.Tobias Geerinckx-Rice2019-07-08
| | | | | | | | | This is needed to deprecate r-biocinstaller, which is no longer distributed. * gnu/packages/bioinformatics.scm (r-xbioc): Update to 0.1.16-1.6ff0670. [propagated-inputs]: Replace deprecated r-biocinstaller with r-biocmanager.
* gnu: cmh: Fix build.Tobias Geerinckx-Rice2019-07-08
| | | | | | | This follows up on commit 1de48e8f8afec23847458c533d2fae0d69d8942a. * gnu/packages/algebra.scm (fplll-4-cmh): New variable. (cmh)[inputs]: Use it.
* gnu: libomp: Download over HTTPS.Tobias Geerinckx-Rice2019-07-08
| | | | * gnu/packages/llvm.scm (libomp)[source]: Use HTTPS.
* gnu: libomp: Fix source hash.Tobias Geerinckx-Rice2019-07-08
| | | | | | | This is a follow-up to commit c5296e205b65a9b53553cf45be2ab223d5e82df5, which updated llvm. * gnu/packages/llvm.scm (libomp)[source]: Fix hash.
* gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.7.Tobias Geerinckx-Rice2019-07-08
| | | | | * gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.4.7.
* gnu: Add emacs-polymode-org.Joseph LaFreniere2019-07-08
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-polymode-org): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-polymode: Update to 0.2.Joseph LaFreniere2019-07-08
| | | | | | | | | * gnu/packages/emacs-xyz.scm (emacs-polymode): Update to 0.2. [source]: Change URL of Git repository to Polymode GitHub project. [homepage]: Change URL to polymode GitHub project. [description]: Realign text. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: i3blocks: Update to ec050e7.ison2019-07-08
| | | | | | * gnu/packages/wm.scm (i3blocks): Update to ec050e7. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dosfstools: Enable compat symlinks.Pierre Langlois2019-07-08
| | | | | | | | | Enable compatibility symlinks to provide commands such as `mkfs.vfat`. * gnu/packages/disk.scm (dosfstools)[arguments]: Pass "--enable-compat-symlinks" to configure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: wireservice: New wireservice-package macro.Pierre Langlois2019-07-08
| | | | | | | | | | | | Replace the parent 'base-package' variable with a 'wireservice-package' macro that includes all common package fields. * gnu/packages/wireservice.scm (base-package): Delete. (wireservice-package): New macro. (python-leather, python-agate, python-agate-sql, python-agate-dbf, python-agate-excel): Use wireservice-package. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* channels: Key cached channel derivations by system.Ludovic Courtès2019-07-08
| | | | | | | | | | | | Previously, the channel instance to derivation mapping would be independent of the system. Thus, building the same channel instance for several different systems would always return the derivation that was first computed. This is a followup to c3ab921eed2a471022e9863a94ea521508782e53. * guix/channels.scm (channel-instance-derivations)[instance->derivation]: Pass the current system as a third argument to 'mcached'.
* gnu: gama: Update to 2.06.Efraim Flashner2019-07-08
| | | | * gnu/packages/gps.scm (gama): Update to 2.06.
* gnu: diffoscope: Update to 116.Vagrant Cascadian2019-07-07
| | | | * gnu/packages/package-management (diffoscope): Update to 116.
* gnu: Add csvkit.Pierre Langlois2019-07-07
| | | | | | | | * gnu/packages/wireservice.scm (csvkit): New variable. * gnu/packages/patches/csvkit-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-agate-excel.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/wireservice.scm (python-agate-excel): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-agate-dbf.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/wireservice.scm (python-agate-dbf): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-agate-sql.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/wireservice.scm (python-agate-sql): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-agate.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/wireservice.scm (python-agate): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-leather.Pierre Langlois2019-07-07
| | | | | | | * gnu/packages/wireservice.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-dbfread.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/python-xyz.scm (python-dbfread): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-crate.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/databases.scm (python-crate): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-pytimeparse.Pierre Langlois2019-07-07
| | | | | | * gnu/packages/time.scm (python-pytimeparse): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-slugify.Pierre Langlois2019-07-07
| | | | | | | | * gnu/packages/python-web.scm (python-slugify): New variable. * gnu/packages/patches/python-slugify-depend-on-unidecode.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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