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* gnu: Add childsplay.•••* gnu/packages/education.scm (childsplay): New variable. Nicolas Goaziou2019-05-29
* installer: Fix wifi menu crash with hidden SSIDs.•••This fixes https://issues.guix.gnu.org/issue/35622. * gnu/installer/connman.scm (<service>): Mention that name may be false. * gnu/installer/newt/wifi.scm (wifi-services): Filter out wifi services without name. Co-authored by: Pierre Neidhardt <mail@ambrevar.xyz> Mathieu Othacehe2019-05-29
* gnu: awscli: Add missing input.•••Fixes <https://bugs.gnu.org/35980>. * gnu/packages/python-web.scm (awscli)[arguments]: Add build phase "fix-reference-to-groff". [inputs]: Add groff. Ricardo Wurmus2019-05-29
* gnu: r-scran: Update to 1.12.1.•••* gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.1. Ricardo Wurmus2019-05-29
* gnu: r-scater: Update to 1.12.2.•••* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.2. Ricardo Wurmus2019-05-29
* gnu: r-sva: Update to 3.32.1.•••* gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.1. Ricardo Wurmus2019-05-29
* gnu: r-genomicfeatures: Update to 1.36.1.•••* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.1. Ricardo Wurmus2019-05-29
* gnu: r-edger: Update to 3.26.4.•••* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.4. Ricardo Wurmus2019-05-29
* gnu: r-variantannotation: Update to 1.30.1.•••* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.1. Ricardo Wurmus2019-05-29
* import: cran: Ignore invalid packages from the system requirements.•••* guix/import/cran.scm (description->package): Filter invalid packages from the list of system requirements. Ricardo Wurmus2019-05-28
* gnu: r-atacseqqc: Update to 1.8.1.•••* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.1. Ricardo Wurmus2019-05-28
* gnu: r-icobra: Update to 1.12.1.•••* gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.1. Ricardo Wurmus2019-05-28
* gnu: r-chippeakanno: Update to 3.18.1.•••* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.1. Ricardo Wurmus2019-05-28
* gnu: r-geosphere: Update to 1.5-10.•••* gnu/packages/cran.scm (r-geosphere): Update to 1.5-10. Ricardo Wurmus2019-05-28
* gnu: r-ggfortify: Update to 0.4.7.•••* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.7. Ricardo Wurmus2019-05-28
* gnu: r-wgcna: Update to 1.68.•••* gnu/packages/cran.scm (r-wgcna): Update to 1.68. Ricardo Wurmus2019-05-28
* gnu: r-bookdown: Update to 0.11.•••* gnu/packages/cran.scm (r-bookdown): Update to 0.11. [propagated-inputs]: Add ghc-pandoc; remove r-yaml. Ricardo Wurmus2019-05-28
* gnu: r-upsetr: Update to 1.4.0.•••* gnu/packages/cran.scm (r-upsetr): Update to 1.4.0. Ricardo Wurmus2019-05-28
* gnu: r-epi: Update to 2.37.•••* gnu/packages/cran.scm (r-epi): Update to 2.37. Ricardo Wurmus2019-05-28
* gnu: r-etm: Update to 1.0.5.•••* gnu/packages/cran.scm (r-etm): Update to 1.0.5. Ricardo Wurmus2019-05-28
* gnu: r-cmprsk: Update to 2.2-8.•••* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-8. Ricardo Wurmus2019-05-28
* gnu: r-ks: Update to 1.11.5.•••* gnu/packages/cran.scm (r-ks): Update to 1.11.5. Ricardo Wurmus2019-05-28
* gnu: r-bayesplot: Update to 1.7.0.•••* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.0. [propagated-inputs]: Add r-glue, r-tibble, and r-tidyselect. Ricardo Wurmus2019-05-28
* gnu: r-refgenome: Update to 1.7.7.•••* gnu/packages/cran.scm (r-refgenome): Update to 1.7.7. Ricardo Wurmus2019-05-28
* gnu: r-snakecase: Update to 0.11.0.•••* gnu/packages/cran.scm (r-snakecase): Update to 0.11.0. Ricardo Wurmus2019-05-28
* gnu: r-openxlsx: Update to 4.1.0.1.•••* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.1. Ricardo Wurmus2019-05-28
* gnu: r-pillar: Update to 1.4.1.•••* gnu/packages/cran.scm (r-pillar): Update to 1.4.1. Ricardo Wurmus2019-05-28
* gnu: r-tsp: Update to 1.1-7.•••* gnu/packages/cran.scm (r-tsp): Update to 1.1-7. Ricardo Wurmus2019-05-28
* gnu: r-jomo: Update to 2.6-8.•••* gnu/packages/cran.scm (r-jomo): Update to 2.6-8. Ricardo Wurmus2019-05-28
* gnu: r-ksamples: Update to 1.2-9.•••* gnu/packages/cran.scm (r-ksamples): Update to 1.2-9. Ricardo Wurmus2019-05-28
* gnu: r-lpsolve: Update to 5.6.13.1.•••* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.13.1. Ricardo Wurmus2019-05-28
* gnu: r-car: Update to 3.0-3.•••* gnu/packages/statistics.scm (r-car): Update to 3.0-3. Ricardo Wurmus2019-05-28
* gnu: r-fpc: Update to 2.2-1.•••* gnu/packages/statistics.scm (r-fpc): Update to 2.2-1. [propagated-inputs]: Remove r-trimcluster. Ricardo Wurmus2019-05-28
* gnu: r-prabclus: Update to 2.2-7.1.•••* gnu/packages/statistics.scm (r-prabclus): Update to 2.2-7.1. Ricardo Wurmus2019-05-28
* gnu: r-zoo: Update to 1.8-6.•••* gnu/packages/statistics.scm (r-zoo): Update to 1.8-6. Ricardo Wurmus2019-05-28
* gnu: r-rmarkdown: Update to 1.13.•••* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.13. [propagated-inputs]: Add r-xfun. Ricardo Wurmus2019-05-28
* gnu: r-evaluate: Update to 0.14.•••* gnu/packages/statistics.scm (r-evaluate): Update to 0.14. Ricardo Wurmus2019-05-28
* self: Fix unquoting.•••This is a follow-up to commit dfc69e4b6d4bbc41a4d37b3cc6ea12adb34aaafa. * guix/self.scm (whole-package): Unquote %storedir in the daemon wrapper. Ricardo Wurmus2019-05-28
* gnu: python-attrs: Update to 19.1.0.•••* gnu/packages/python-xyz.scm (python-attrs): Update to 19.1.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> h.nasajpour2019-05-28
* gnu: python-flask: Update to 1.0.3.•••* gnu/packages/python-web.scm (python-flask): Update to 1.0.3. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> h.nasajpour2019-05-28
* gnu: d-feet: Fix missing input and update to 0.3.14.•••* gnu/packages/gnome.scm (d-feet): Update to 0.3.14. [inputs]: Add hicolor-icon-theme since d-feet won't list anything without it. Pierre Neidhardt2019-05-28
* gnu: guix: Update to 35d1354.•••* gnu/packages/package-management.scm (guix): Update to 35d1354. Ludovic Courtès2019-05-28
* gnu: emacs-relint: Update to 1.8.•••* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.8. Nicolas Goaziou2019-05-27
* gnu: emacs-xr: Update to 1.12.•••* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.12. Nicolas Goaziou2019-05-27
* publish: Display the compression method and level in use.•••* guix/scripts/publish.scm (guix-publish): Use 'info' instead of 'format' for the initial message. When COMPRESSION is true, display the method and level in use. Ludovic Courtès2019-05-27
* lzlib: 'lzread!' never returns more than it was asked for.•••Fixes a bug whereby 'lzread!' could return more than COUNT. * guix/lzlib.scm (lzread!): Rewrite in a semi-functional style. Ludovic Courtès2019-05-27
* gnu: guix: Add dependency on lzlib.•••* gnu/packages/package-management.scm (guix)[inputs]: Add LZLIB. Ludovic Courtès2019-05-27
* self: Add dependency on lzlib.•••* guix/self.scm (compiled-guix): Pass #:lzlib to 'make-config.scm'. (make-config.scm): Add #:lzlib and honor it. (specification->package): Add "lzlib". Ludovic Courtès2019-05-27
* publish: Add support for lzip.•••* guix/scripts/publish.scm (show-help, %options): Support '-C METHOD' and '-C METHOD:LEVEL'. (default-compression): New procedure. (bake-narinfo+nar): Add lzip. (nar-response-port): Likewise. (string->compression-type): New procedure. (make-request-handler): Generalize /nar/gzip handler to handle /nar/lzip as well. * tests/publish.scm ("/nar/lzip/*"): New test. ("/*.narinfo with lzip compression"): New test. * doc/guix.texi (Invoking guix publish): Document it. (Requirements): Mention lzlib. Ludovic Courtès2019-05-27
* utils: Support compression and decompression with lzip.•••* guix/utils.scm (lzip-port): New procedure. (decompressed-port, compressed-port, compressed-output-port): Add 'lzip case. * tests/utils.scm <top level>: Call 'test-compression/decompression' for 'lzip as well. Ludovic Courtès2019-05-27
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