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* Merge branch 'staging' into core-updatesMarius Bakke2019-05-25
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| * gnu: nss, nss-certs: Update to 3.44.Marius Bakke2019-05-24
| | | | | | | | | | * gnu/packages/nss.scm (nss): Update to 3.44. * gnu/packages/certs.scm (nss-certs): Likewise.
| * gnu: imagemagick: Update to 6.9.10-46.Marius Bakke2019-05-24
| | | | | | | | * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-46.
| * gnu: eudev: Update to 3.2.8.Marius Bakke2019-05-24
| | | | | | | | * gnu/packages/linux.scm (eudev): Update to 3.2.8.
| * gnu: python-urllib3: Update to 1.25.3.Marius Bakke2019-05-24
| | | | | | | | * gnu/packages/python-web.scm (python-urllib3): Update to 1.25.3.
| * gnu: python-pysocks: Update to 1.7.0.Marius Bakke2019-05-24
| | | | | | | | * gnu/packages/python-xyz.scm (python-pysocks): Update to 1.7.0.
| * gnu: at-spi2-core: Update to 2.32.1.Marius Bakke2019-05-24
| | | | | | | | | | | | | | * gnu/packages/patches/at-spi2-core-meson-compat.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/gtk.scm (at-spi2-core): Update to 2.32.1. [source](patches): Remove.
| * gnu: libva: Update to 2.4.1.Marius Bakke2019-05-24
| | | | | | | | * gnu/packages/video.scm (libva): Update to 2.4.1.
| * gnu: python-mako: Update to 1.0.10.Marius Bakke2019-05-24
| | | | | | | | * gnu/packages/python-xyz.scm (python-mako): Update to 1.0.10.
| * gnu: python-requests: Update to 2.22.0.Marius Bakke2019-05-24
| | | | | | | | * gnu/packages/python-web.scm (python-requests): Update to 2.22.0.
| * gnu: cups-filters: Update to 1.23.0.Marius Bakke2019-05-24
| | | | | | | | * gnu/packages/cups.scm (cups-filters): Update to 1.23.0.
| * gnu: libical: Update to 3.0.5.Marius Bakke2019-05-24
| | | | | | | | | | * gnu/packages/calendar.scm (libical): Update to 3.0.5. [native-inputs]: Add GTK-DOC.
| * gnu: sbc: Update to 1.4.Marius Bakke2019-05-24
| | | | | | | | * gnu/packages/linux.scm (sbc): Update to 1.4.
| * gnu: python-sphinx: Update to 2.0.1.Marius Bakke2019-05-24
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/sphinx.scm (python-sphinx): Update to 2.0.1. [arguments]: Remove Python2 workaround. [propagated-inputs]: Remove PYTHON-SIX and PYTHON-SPHINXCONTRIB-WEBSUPPORT. Add PYTHON-SPHINXCONTRIB-APPLEHELP, PYTHON-SPHINXCONTRIB-DEVHELP, PYTHON-SPHINXCONTRIB-HTMLHELP, PYTHON-SPHINXCONTRIB-JSMATH, PYTHON-SPHINXCONTRIB-QTHELP, and PYTHON-SPHINXCONTRIB-SERIALIZINGHTML. (python2-sphinx)[source]: Stay on version 1.7.7. [arguments]: New field. [propagated-inputs]: Do not inherit from the Python 3 Sphinx variant.
| * gnu: postgresql: Remove graft for 10.8.Marius Bakke2019-05-24
| | | | | | | | | | | | * gnu/packages/databases.scm (postgresql): Update to 10.8. [replacement]: Remove. (postgresql-10.8): Remove variable.
| * Merge branch 'master' into stagingMarius Bakke2019-05-24
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| | * gnu: help2man: Update to 1.47.10.Marius Bakke2019-05-24
| | | | | | | | | | | | * gnu/packages/man.scm (help2man/latest): Update to 1.47.10.
| | * gnu: python-markdown: Update to 3.1.1.Marius Bakke2019-05-24
| | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-markdown): Update to 3.1.1.
| | * gnu: perl: Update home page.Marius Bakke2019-05-24
| | | | | | | | | | | | * gnu/packages/perl.scm (perl)[home-page]: Use HTTPS.
| | * gnu: Add python-sphinxcontrib-qthelp.Marius Bakke2019-05-24
| | | | | | | | | | | | * gnu/packages/sphinx.scm (python-sphinxcontrib-qthelp): New public variable.
| | * gnu: Add python-sphinxcontrib-htmlhelp.Marius Bakke2019-05-24
| | | | | | | | | | | | * gnu/packages/sphinx.scm (python-sphinxcontrib-htmlhelp): New public variable.
| | * gnu: Add python-sphinxcontrib-jsmath.Marius Bakke2019-05-24
| | | | | | | | | | | | * gnu/packages/sphinx.scm (python-sphinxcontrib-jsmath): New public variable.
| | * gnu: Add python-sphinxcontrib-devhelp.Marius Bakke2019-05-24
| | | | | | | | | | | | * gnu/packages/sphinx.scm (python-sphinxcontrib-devhelp): New public variable.
| | * gnu: Add python-sphinxcontrib-applehelp.Marius Bakke2019-05-24
| | | | | | | | | | | | * gnu/packages/sphinx.scm (python-sphinxcontrib-applehelp): New public variable.
| | * gnu: Add python-sphinxcontrib-serializinghtml.Marius Bakke2019-05-24
| | | | | | | | | | | | | | | * gnu/packages/sphinx.scm (python-sphinxcontrib-serializinghtml): New public variable.
| | * gnu: Move Sphinx and friends to (gnu packages sphinx).Marius Bakke2019-05-24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-sphinxcontrib-websupport, python2-sphinxcontrib-websupport, python-sphinx, python2-sphinx, python-sphinx-gallery, python2-sphinx-gallery, python-sphinx-rtd-theme, python2-sphinx-rtd-theme, python-guzzle-sphinx-theme, python2-guzzle-sphinx-theme, python-sphinxcontrib-newsfeed, python-sphinxcontrib-programoutput, python2-sphinxcontrib-programoutput, python-sphinx-repoze-interface, python2-sphinx-repoze-interface, python-sphinx-cloud-sptheme, python2-sphinx-cloud-sptheme, python-sphinx-alabaster-theme, python2-sphinx-alabaster-theme, python-sphinx-me, python-sphinxcontrib-svg2pdfconverter): Move to ... (gnu): * gnu/packages/sphinx.scm: ... here. New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly. * gnu/packages/admin.scm, gnu/packages/bioinformatics.scm, gnu/packages/calendar.scm, gnu/packages/cluster.scm, gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/disk.scm, gnu/packages/django.scm, gnu/packages/elf.scm, gnu/packages/emacs-xyz.scm, gnu/packages/emulators.scm, gnu/packages/finance.scm, gnu/packages/image.scm, gnu/packages/libffi.scm, gnu/packages/mail.scm, gnu/packages/mpd.scm, gnu/packages/openstack.scm, gnu/packages/pdf.scm, gnu/packages/python-web.scm, gnu/packages/search.scm, gnu/packages/statistics.scm, gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm, gnu/packages/tls.scm, gnu/packages/web.scm: Adjust module imports.
| | * gnu: postgresql: Replace with 10.8 [security fixes].Marius Bakke2019-05-24
| | | | | | | | | | | | | | | | | | | | | This fixes CVE-2019-10129 and CVE-2019-10130. * gnu/packages/databases.scm (postgresql)[replacement]: New field. (postgresql-10.8): New variable.
| | * gnu: Add coq-stdpp.Dan Frumin2019-05-24
| | | | | | | | | | | | | | | | | | * gnu/packages/coq.scm (coq-stdpp): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| | * gnu: lxqt-panel: fix taskbar plugin's application list issue.Reza Alizadeh Majd2019-05-24
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/lxqt.scm (lxqt-panel): move `kwindowsystem` from `inputs` to `propagated-inputs` Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| | * gnu: lxqt-session: fix lxqt-rc.xml permission issueReza Alizadeh Majd2019-05-24
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/lxqt.scm (lxqt-session): add write permission to lxqt-rc.xml file after initial copy to user directory Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| | * gnu: Add libjit.Andy Tai2019-05-24
| | | | | | | | | | | | | | | | | | * gnu/packages/assembly.scm (libjit): Add at 0.1.4 Co-authored-by: Ludovic Courtès <ludo@gnu.org>
| | * gnu: guile-next: Update to 2.9.2.Ludovic Courtès2019-05-24
| | | | | | | | | | | | * gnu/packages/guile.scm (guile-next): Update to 2.9.2.
| | * gnu: Add chocolate-doom.Jakob L. Kreuze2019-05-24
| | | | | | | | | | | | * gnu/packages/games.scm (chocolate-doom): New variables.
| | * gnu: gajim-omemo: Update to 2.6.29.Rutger Helling2019-05-24
| | | | | | | | | | | | * gnu/packages/messaging.scm (gajim-omemo): Update to 2.6.29.
| | * gnu: parallel: Update to 20190522.Tobias Geerinckx-Rice2019-05-23
| | | | | | | | | | | | * gnu/packages/parallel.scm (parallel): Update to 20190522.
| | * gnu: wgetpaste: Remove dead paste site.Efraim Flashner2019-05-23
| | | | | | | | | | | | | | | * gnu/packages/wget.scm (wgetpaste)[arguments]: Add custom phase to remove newly defunct paste site.
| | * gnu: Add ioquake3.Pierre Neidhardt2019-05-23
| | | | | | | | | | | | * gnu/packages/game-development.scm (ioquake3): New variable.
| | * gnu: strace: Update to 5.1.Marius Bakke2019-05-23
| | | | | | | | | | | | * gnu/packages/linux.scm (strace): Update to 5.1.
| | * gnu: notmuch: Update to 0.28.4.Marius Bakke2019-05-23
| | | | | | | | | | | | | | | | | | * gnu/packages/mail.scm (notmuch): Update to 0.28.4. [native-inputs]: Change PYTHON-2 and PYTHON2-DOCUTILS to PYTHON and PYTHON-DOCUTILS.
| | * gnu: silkaj: Update to 0.7.0.Nicolas Goaziou2019-05-23
| | | | | | | | | | | | | | | * gnu/packages/finance.scm (silkaj): Update to 0.7.0. [inputs]: Add python-texttable.
| | * gnu: flare-game: Update to 1.10.Nicolas Goaziou2019-05-23
| | | | | | | | | | | | * gnu/packages/games.scm (flare-game): Update to 1.10.
| | * gnu: flare-engine: Update to 1.10.Nicolas Goaziou2019-05-23
| | | | | | | | | | | | * gnu/packages/games.scm (flare-engine): Update to 1.10.
| | * gnu: salmon: Update to 0.13.1.Ricardo Wurmus2019-05-23
| | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (salmon): Update to 0.13.1. [arguments]: Adjust "do-not-look-for-boost" build phase; adjust "prepare-rapmap" phase; adjust "use-system-libraries" phase. [inputs]: Remove bwa, jellyfish, spdlog-for-salmon. [native-inputs]: Add pkg-config. (spdlog-for-salmon, bwa-for-salmon): Remove variables.
| | * gnu: python-duniterpy: Update to 0.54.1.Nicolas Goaziou2019-05-23
| | | | | | | | | | | | * gnu/packages/finance.scm (python-duniterpy): Update to 0.54.1.
| | * gnu: wireshark: Update to 3.0.2.Nicolas Goaziou2019-05-23
| | | | | | | | | | | | * gnu/packages/networking.scm (wireshark): Update to 3.0.2.
| | * import: cran: Ignore invalid packages.Ricardo Wurmus2019-05-23
| | | | | | | | | | | | | | | * guix/import/cran.scm (invalid-packages): New variable. (description->package): Use it.
| | * gnu: keepassxc: Update to 2.4.1.Nicolas Goaziou2019-05-23
| | | | | | | | | | | | | | | | | | * gnu/packages/password-utils.scm (keepassxc): Update to 2.4.1. [arguments]: Disable update checking. [inputs]: Add qrencode and qtsvg.
| | * gnu: Add squirrel.Andy Tai2019-05-22
| | | | | | | | | | | | | | | * gnu/packages/squirrel.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
| | * gnu: git-daemon-service-type: Fix typo "repositories".Vagrant Cascadian2019-05-22
| | | | | | | | | | | | * gnu/services/version-control (git-daemon-service-type)[description]: Fix typo.
| | * gnu: darkstat-service-type: Fix typo "statistics".Vagrant Cascadian2019-05-22
| | | | | | | | | | | | * gnu/services/monitoring (darkstat-service-type)[description]: Fix typo.
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