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* gnu: python-debian: Update to 0.1.36.Vagrant Cascadian2019-09-07
| | | | | | | | * gnu/packages/python-xyz (python-debian): Update to 0.1.36. [source]: Switch to using git-fetch. [arguments]: Add phase to delete tests depending on tools not yet present in guix. [propagated-inputs]: Add python-chardet.
* gnu: r-rsubread: Update to 1.34.7.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.7.
* gnu: r-regioner: Update to 1.16.3.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.3.
* gnu: r-gprofiler: Update to 0.6.8.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.8.
* gnu: r-annotationhub: Update to 2.16.1.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.16.1.
* gnu: r-edger: Update to 3.26.8.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.8.
* gnu: r-ggraph: Update to 2.0.0.Ricardo Wurmus2019-09-08
| | | | | | * gnu/packages/cran.scm (r-ggraph): Update to 2.0.0. [propagated-inputs]: Add r-graphlayouts, r-rlang, and r-tidygraph; remove r-plyr.
* gnu: r-msigdbr: Update to 7.0.1.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/cran.scm (r-msigdbr): Update to 7.0.1.
* gnu: r-ggeffects: Update to 0.12.0.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/cran.scm (r-ggeffects): Update to 0.12.0.
* gnu: r-ggformula: Update to 0.9.2.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/cran.scm (r-ggformula): Update to 0.9.2.
* gnu: r-insight: Update to 0.5.0.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/cran.scm (r-insight): Update to 0.5.0.
* gnu: r-ggpubr: Update to 0.2.3.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/cran.scm (r-ggpubr): Update to 0.2.3.
* gnu: r-geometry: Update to 0.4.4.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/cran.scm (r-geometry): Update to 0.4.4.
* gnu: r-feather: Update to 0.3.4.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/cran.scm (r-feather): Update to 0.3.4.
* gnu: r-matrixstats: Update to 0.55.0.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/statistics.scm (r-matrixstats): Update to 0.55.0.
* gnu: r-rcpparmadillo: Update to 0.9.700.2.0.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.700.2.0.
* gnu: r-devtools: Update to 2.2.0.Ricardo Wurmus2019-09-08
| | | | | | * gnu/packages/statistics.scm (r-devtools): Update to 2.2.0. [propagated-inputs]: Add r-covr, r-crayon, r-desc, r-dt, r-ellipsis, r-glue, and r-rversions.
* gnu: r-gdtools: Update to 0.2.0.Ricardo Wurmus2019-09-08
| | | | | | * gnu/packages/statistics.scm (r-gdtools): Update to 0.2.0. [inputs]: Add freetype. [propagated-inputs]: Add r-systemfonts; remove r-withr.
* gnu: Add r-tidygraph.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/cran.scm (r-tidygraph): New variable.
* gnu: Add r-graphlayouts.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/cran.scm (r-graphlayouts): New variable.
* gnu: Add r-systemfonts.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/cran.scm (r-systemfonts): New variable.
* gnu: Add r-covr.Ricardo Wurmus2019-09-08
| | | | * gnu/packages/cran.scm (r-covr): New variable.
* tests: opam: Fix input type in import test.Julien Lepiller2019-09-07
| | | | * tests/opam.scm: Expect propagated-inputs instead of inputs.
* gnu: poussetaches: Update to 0.0.2.Arun Isaac2019-09-08
| | | | * gnu/packages/web.scm (poussetaches): Update to 0.0.2.
* gnu: nml: Fix for newer pillow version.Julien Lepiller2019-09-07
| | | | | * gnu/packages/game-development.scm (nml)[arguments]: Add a phase to fix for newer pillow.
* doc: Use @lisp instead of @example for Scheme snippets.Ludovic Courtès2019-09-07
| | | | | | | | This is a followup to f8c143a7131d6f40f387f4cd2ad1fa78b5e2f429, which allows syntax highlighting of @lisp snippets in the HTML output. * doc/guix.texi, doc/contributing.texi: Use @lisp instead of @example for all the Scheme snippets.
* doc: Work around (htmlprag) parser issue.Ludovic Courtès2019-09-07
| | | | | * doc/build.scm (guile-lib/htmlprag-fixed): New variable. (syntax-highlighted-html): Use it instead of GUILE-LIB.
* gnu: qtermwidget: Enable UTF-8 support.Kei Kebreau2019-09-07
| | | | * gnu/packages/lxqt.scm (qtermwidget)[inputs]: Add utf8proc.
* gnu: wireguard: Update to 0.0.20190905.Rutger Helling2019-09-07
| | | | * gnu/packages/vpn.scm (wireguard): Update to 0.0.20190905.
* gnu: linux-libre: Update to 5.2.13.Mark H Weaver2019-09-06
| | | | | * gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.13. (linux-libre-5.2-pristine-source): Update hash.
* gnu: linux-libre@4.14: Update to 4.19.71.Mark H Weaver2019-09-06
| | | | | * gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.71. (linux-libre-4.19-pristine-source): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.142.Mark H Weaver2019-09-06
| | | | | * gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.142. (linux-libre-4.14-pristine-source): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.191.Mark H Weaver2019-09-06
| | | | | * gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.191. (linux-libre-4.9-pristine-source): Update hash.
* gnu: linux-libre@4.4: Update to 4.4.191.Mark H Weaver2019-09-06
| | | | | * gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.191. (linux-libre-4.4-pristine-source): Update hash.
* Revert "services: Add ‘/usr/bin/env’ special file."Mark H Weaver2019-09-06
| | | | | | | | This reverts commit 3b38bf141a464e1bb370af7d2b2651d1efb29781. The Guix project discussed this years ago and decided against including /usr/bin/env. That decision should not be reversed without a wider discussion.
* gnu: python-scipy: Update to 1.3.1.Ricardo Wurmus2019-09-07
| | | | | * gnu/packages/python-xyz.scm (python-scipy): Update to 1.3.1. (python2-scipy): Keep at version 1.2.2.
* gnu: xfce4-panel: Fix tzdata path.L p R n d n2019-09-07
| | | | | | | * gnu/packages/xfce.scm (xfce4-panel)[inputs]: Add tzdata. [arguments] Add Fix-tzdata-path phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: libxfce4ui: Add vendor.L p R n d n2019-09-07
| | | | | | * gnu/packages/xfce.scm (libxfce4ui)[arguments]: Add #:configure-flags. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: libxfce4ui: Add gobject-introspection support.L p R n d n2019-09-07
| | | | | | * gnu/packages/xfce.scm (libxfce4ui): Add gobject-introspection to native-inputs. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: xfconf: Fix tests.L p R n d n2019-09-07
| | | | | | | | * gnu/packages/xfce.scm (xfconf)[arguments]: Rename check phase to custom-check. [native-inputs]: Add dbus. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: xfconf: Add vala support.L p R n d n2019-09-07
| | | | | | * gnu/packages/xfce.scm (xfconf): Add vala to native-inputs. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: xfconf: Add support for gobject-introspection.L p R n d n2019-09-07
| | | | | | * gnu/packages/xfce.scm (xfconf): Add gobject-introspection to native-inputs. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* doc: Highlight Scheme syntax in the HTML output.Ludovic Courtès2019-09-07
| | | | | * doc/build.scm (syntax-highlighted-html): New procedure. (html-manual): Use it.
* gnu: qtwebkit: Disable non-x86 builds.Ludovic Courtès2019-09-07
| | | | * gnu/packages/qt.scm (qtwebkit)[supported-systems]: New field.
* gnu: ecl-net.didierverna.asdf-flv: Fix variable name.Ludovic Courtès2019-09-07
| | | | | | | Fixes a typo in 0403d01f01c22ddd552dd5a0cfb97b0e8e58da9e. * gnu/packages/lisp.scm (ecl-net.didierverna.asdf-flv): New name of the second occurrence of 'ecl-alexandria'.
* gnu: Add emacs-poet-theme.Ricardo Wurmus2019-09-06
| | | | * gnu/packages/emacs-xyz.scm (emacs-poet-theme): New variable.
* gnu: exim: Update to 4.92.2 [fixes CVE-2019-15846].Tobias Geerinckx-Rice2019-09-06
| | | | * gnu/packages/mail.scm (exim): Update to 4.92.2.
* gnu: crates-io.scm: Fix several home-pages.Efraim Flashner2019-09-06
| | | | | | | * gnu/packages/crates-io.scm (rust-constant-time-eq, rust-fixedbitset, rust-futures, rust-pico-sys, rust-pkg-config, rust-quick-error, rust-remove-dir-all, rust-spin, rust-tempdir, rust-traitobject, rust-void)[home-page]: Update to correct home-page.
* gnu: Add samblaster.Ricardo Wurmus2019-09-06
| | | | * gnu/packages/bioinformatics.scm (samblaster): New variable.
* gnu: Add r-txdb-celegans-ucsc-ce6-ensgene.Ricardo Wurmus2019-09-06
| | | | | * gnu/packages/bioconductor.scm (r-txdb-celegans-ucsc-ce6-ensgene): New variable.
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