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* gnu: bedtools: Use modify-phases.Ben Woodcroft2016-01-11
| | | | * gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases.
* gnu: r: Update to 3.2.3.Andreas Enge2016-01-09
| | | | * gnu/packages/statistics.scm (r): Update to 3.2.3.
* gnu: icecat: Update to 38.5.2-gnu1.Andreas Enge2016-01-09
| | | | * gnu/packages/gnuzilla.scm (icecat): Update to 38.5.2-gnu1.
* gnu: ruby-2.1: Update to 2.1.8.Ben Woodcroft2016-01-09
| | | | * gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.8.
* gnu: i2c-tools: Update source and home-page URLs.Leo Famulari2016-01-08
| | | | | * gnu/packages/linux.scm (i2c-tools)[source]: Update URL. [home-page]: Update URL.
* gnu: lm-sensors: Update source and home-page URLs.Leo Famulari2016-01-08
| | | | | * gnu/packages/linux.scm (lm-sensors)[source]: Update URL. [home-page]: Update URL.
* gnu: nss: Update to 3.21 [fixes CVE-2015-7575].Mark H Weaver2016-01-08
| | | | | | * gnu/packages/gnuzilla.scm (nss): Update to 3.21. [arguments]: In configure phase, setenv CC=gcc. * gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
* build-system/python: 'pypi-uri' takes an optional file name extension.Ludovic Courtès2016-01-08
| | | | | | | Suggested by swedebugia <swedebugia@riseup.net>. * guix/build-system/python.scm (pypi-uri): Add 'extension' parameter and use it.
* gnu: Add missing (gnu packages gcc) import.Mathieu Lirzin2016-01-08
| | | | | * gnu/packages/bioinformatics.scm: Use (gnu packages gcc). This is required by 'r-impute' for 'gfortran'.
* gnu: xterm: Update to 322.Mathieu Lirzin2016-01-08
| | | | * gnu/packages/xorg.scm (xterm): Update to 322.
* gnu: epiphany: Update to 3.18.2.宋文武2016-01-08
| | | | * gnu/packages/gnome.scm (epiphany): Update to 3.18.2.
* gnu: webkitgtk: Update to 2.10.4.宋文武2016-01-08
| | | | * gnu/packages/webkit.scm (webkitgtk): Update to 2.10.4.
* doc: Document network-manager-service.宋文武2016-01-08
| | | | * doc/guix.texi (Networking Services): Document network-manager-service.
* doc: Add elaborate package search example.Ludovic Courtès2016-01-08
| | | | | * doc/guix.texi (Invoking guix package): Add elaborate --search example using recsel and sexes.
* gnu: Add Pfff.Pjotr Prins2016-01-07
| | | | * gnu/packages/textutils.scm (pfff): New variable.
* gnu: mpv: Remove 'samba' input.Alex Kost2016-01-07
| | | | | | | This is a heavy-weight and uncommon feature. See <http://lists.gnu.org/archive/html/guix-devel/2015-12/msg00701.html>. * gnu/packages/video.scm (mpv)[inputs]: Remove 'samba'.
* emacs: Display supported systems in "Package Info".Alex Kost2016-01-07
| | | | | | | | | * emacs/guix-main.scm (%package-param-alist): Add 'systems'. * emacs/guix-ui-package.el (guix-package-info-insert-systems): New procedure. (guix-package-info-format): Add it. (guix-output-info-format): Likewise. (guix-package-info-titles): Add "Supported systems" title.
* gnu: Add genomation.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-genomation): New variable.
* gnu: Add seqPattern.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
* gnu: Add impute.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-impute): New variable.
* gnu: Add BSgenome.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-bsgenome): New variable.
* gnu: Add plotly.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-plotly): New variable.
* gnu: Add viridis.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-viridis): New variable.
* gnu: Add topGO.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-topgo): New variable.
* gnu: Add matrixStats.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-matrixstats): New variable.
* gnu: Add R.rsp.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-r-rsp): New variable.
* gnu: Add R.cache.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-r-cache): New variable.
* gnu: Add R.utils.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-r-utils): New variable.
* gnu: Add R.oo.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-r-oo): New variable.
* gnu: Add R.methodsS3.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-r-methodss3): New variable.
* gnu: Add base64enc.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-base64enc): New variable.
* gnu: Add DT.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-dt): New variable.
* gnu: Add SparseM.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-sparsem): New variable.
* gnu: Add GO.db.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-go-db): New variable.
* gnu: Add GenomicFeatures.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-genomicfeatures): New variable.
* gnu: Add rtracklayer.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-rtracklayer): New variable.
* gnu: Add GenomicAlignments.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-genomicalignments): New variable.
* gnu: Add SummarizedExperiment.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-summarizedexperiment): New variable.
* gnu: Add Rsamtools.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-rsamtools): New variable.
* gnu: Add Biostrings.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-biostrings): New variable.
* gnu: Add BiocParallel.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-biocparallel): New variable.
* gnu: Add biomaRt.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-biomart): New variable.
* gnu: Add AnnotationDbi.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-annotationdbi): New variable.
* gnu: Add Biobase.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/bioinformatics.scm (r-biobase): New variable.
* gnu: Add snow.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-snow): New variable.
* gnu: Add futile.logger.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-futile-logger): New variable.
* gnu: Add futile.options.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-futile-options): New variable.
* gnu: Add lambda.r.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-lambda-r): New variable.
* gnu: Add r-xml.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-xml): New variable.
* gnu: Add RCurl.Ricardo Wurmus2016-01-07
| | | | * gnu/packages/statistics.scm (r-rcurl): New variable.
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