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* guix build, daemon: Rename "--no-build-hook" to "--no-offload".Ludovic Courtès2019-11-26
| | | | | | | | | | | | | | | | This is a followup to bc69ea2d605810cc32e13ed03d5848b8dc358b61. * guix/scripts/build.scm (show-build-options-help): Rename "--no-build-hook" to "--no-offload". (%standard-build-options): Likewise, and warn when "--no-build-hook" is passed. * nix/nix-daemon/guix-daemon.cc (options): Add "--no-offload" and mark "--no-build-hook" as hidden. * guix/scripts/offload.scm: Adjust comment. * doc/guix.texi (Invoking guix-daemon, Common Build Options): Replace "--no-build-hook" with "--no-offload". * etc/completion/fish/guix.fish, etc/completion/zsh/_guix: Adjust accordingly.
* doc: cookbook: Add cross-references to the Guile manual.Ludovic Courtès2019-11-26
| | | | | * doc/guix-cookbook.texi (A Scheme Crash Course): Add cross-reference to the Guile manual.
* doc: cookbook: Use @result{} & co. instead of a '>' prompt.Ludovic Courtès2019-11-26
| | | | | * doc/guix-cookbook.texi (A Scheme Crash Course) (Extended example): Use @result{}, @print{}, and @error{}.
* doc: cookbook: Use Texinfo quotes.Ludovic Courtès2019-11-26
| | | | | * doc/guix-cookbook.texi: Use Texinfo quotes ``like this'' instead of straight quotes or curly quotes.
* doc: cookbook: Add cross-reference about ./pre-inst-env.Ludovic Courtès2019-11-26
| | | | | * doc/guix-cookbook.texi (Direct checkout hacking): Refer to "Running Guix Before It Is Installed".
* doc: cookbook: Use @lisp for Scheme snippets.Ludovic Courtès2019-11-26
| | | | | * doc/guix-cookbook.texi: Use @lisp instead of @example where appropriate.
* tests: Avoid unnecessary use of 'mock'.Ludovic Courtès2019-11-26
| | | | | * tests/build-utils.scm ("wrap-script, simple case"): Use the real 'which' instead of mocking it.
* tests: Avoid (catch 'srfi-34 …) form.Ludovic Courtès2019-11-26
| | | | | * tests/build-utils.scm ("wrap-script, raises condition"): Use 'guard' instead of "catch 'srfi-34".
* gnu: linux-libre: Update to 5.3.13.Mark H Weaver2019-11-25
| | | | | * gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.13. (linux-libre-5.3-pristine-source): Update hash.
* gnu: linux-libre@4.19: Update to 4.19.86.Mark H Weaver2019-11-25
| | | | | * gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.86. (linux-libre-4.19-pristine-source): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.156.Mark H Weaver2019-11-25
| | | | | * gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.156. (linux-libre-4.14-pristine-source): Update hash.
* gnu: Add netcat-openbsd.Alex Griffin2019-11-25
| | | | * gnu/packages/admin.scm (netcat-openbsd): New variable.
* gnu: r-rrcov: Update to 1.4-9.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/statistics.scm (r-rrcov): Update to 1.4-9.
* gnu: r-future: Update to 1.15.1.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-future): Update to 1.15.1.
* gnu: r-epi: Update to 2.40.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-epi): Update to 2.40.
* gnu: r-vioplot: Update to 0.3.3.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-vioplot): Update to 0.3.3.
* gnu: mes: Update to 0.21.Jan Nieuwenhuizen2019-11-25
| | | | * gnu/packages/mes.scm (mes): Update to 0.21.
* gnu: guile-gi: Update to 0.2.1.Ricardo Wurmus2019-11-25
| | | | | | * gnu/packages/guile-xyz.scm (guile-gi): Update to 0.2.1. [arguments]: Add phase to start Xorg server for tests. [native-inputs]: Add xorg-server.
* gnu: Add bsequencer.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/music.scm (bsequencer): New variable.
* gnu: r-bookdown: Update to 0.16.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-bookdown): Update to 0.16.
* gnu: r-protviz: Update to 0.5.1.Ricardo Wurmus2019-11-25
| | | | | * gnu/packages/cran.scm (r-protviz): Update to 0.5.1. [inputs]: Remove perl and python-2.
* gnu: r-rnifti: Update to 1.0.0.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-rnifti): Update to 1.0.0.
* gnu: r-tidytree: Update to 0.3.0.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-tidytree): Update to 0.3.0.
* gnu: r-sjplot: Update to 2.8.0.Ricardo Wurmus2019-11-25
| | | | | | * gnu/packages/cran.scm (r-sjplot): Update to 2.8.0. [propagated-inputs]: Remove r-broom and r-nlme; add r-effectsize and r-parameters.
* gnu: r-tidyverse: Update to 1.3.0.Ricardo Wurmus2019-11-25
| | | | | * gnu/packages/cran.scm (r-tidyverse): Update to 1.3.0. [propagated-inputs]: Add r-pillar.
* gnu: r-parameters: Update to 0.3.0.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-parameters): Update to 0.3.0.
* gnu: r-abn: Update to 2.2.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-abn): Update to 2.2.
* gnu: r-limsolve: Update to 1.5.6.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-limsolve): Update to 1.5.6.
* gnu: r-prodlim: Update to 2019.11.13.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-prodlim): Update to 2019.11.13.
* gnu: r-webshot: Update to 0.5.2.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-webshot): Update to 0.5.2.
* gnu: r-insight: Update to 0.7.0.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-insight): Update to 0.7.0.
* gnu: Add r-effectsize.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-effectsize): New variable.
* gnu: r-rcppeigen: Update to 0.3.3.7.0.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.7.0.
* gnu: r-rlang: Update to 0.4.2.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/statistics.scm (r-rlang): Update to 0.4.2.
* gnu: r-digest: Update to 0.6.23.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/statistics.scm (r-digest): Update to 0.6.23.
* gnu: r-pheatmap: Move to (gnu packages cran).Ricardo Wurmus2019-11-25
| | | | | * gnu/packages/statistics.scm (r-pheatmap): Move from here... * gnu/packages/cran.scm (r-pheatmap): ...to here.
* gnu: r-scales: Update to 1.1.0.Ricardo Wurmus2019-11-25
| | | | | * gnu/packages/cran.scm (r-scales): Update to 1.1.0. [propagated-inputs]: Remove r-rcpp; add r-farver and r-lifecycle.
* gnu: r-scales: Move to (gnu packages cran).Ricardo Wurmus2019-11-25
| | | | | * gnu/packages/statistics.scm (r-scales): Move variable from here... * gnu/packages/cran.scm (r-scales): ...to here.
* gnu: sdsl-lite: Don't use bundled libraries.Efraim Flashner2019-11-25
| | | | | | | * gnu/packages/datastructures.scm (sdsl-lite)[source]: Remove bundled libraries in a snippet. Add patch to link to external libraries. [arguments]: Add phase to install static library. [native-inputs]: Add libdivsufsort.
* gnu: sdsl-lite: Remove unused inputs.Efraim Flashner2019-11-25
| | | | | | | | Documentation also wants graphviz, which drastically increases 'guiz size sdsl-lite'. * gnu/packages/datastructures.scm (sdsl-lite)[native-inputs]: Remove doxygen.
* gnu: libdivsufsort: Move to datastructures.scm.Efraim Flashner2019-11-25
| | | | | * gnu/packages/bioinformatics.scm (libdivsufsort): Move to ... * gnu/packages/datastructures.scm: ... here.
* gnu: Add boost-static.Efraim Flashner2019-11-25
| | | | * gnu/packages/boost.scm (boost-static): New variable.
* gnu: coq-bignums: Don't use unstable tarball.Efraim Flashner2019-11-25
| | | | * gnu/pacakges/coq.scm (coq-bignums)[source]: Download using git-fetch.
* gnu: bioperl-minimal: Don't use unstable tarball.Efraim Flashner2019-11-25
| | | | | * gnu/packages/bioinformatics.scm (bioperl-minimal)[source]: Download using git-fetch.
* gnu: innoextract: Update to 1.8.Efraim Flashner2019-11-25
| | | | * gnu/packages/compression.scm (innoextract): Update to 1.8.
* gnu: innoextract: Don't use unstable tarball.Efraim Flashner2019-11-25
| | | | | * gnu/packages/compression.scm (innoextract)[source]: Download the release tarball.
* gnu: unshield: Don't use unstable tarball.Efraim Flashner2019-11-25
| | | | | * gnu/packages/compression.scm (unshield)[source]: Download using git-fetch.
* gnu: snappy: Don't use unstable tarball.Efraim Flashner2019-11-25
| | | | | * gnu/packages/compression.scm (snappy)[source]: Download using git-fetch.
* gnu: sfarklib: Don't use unstable tarball.Efraim Flashner2019-11-25
| | | | | * gnu/packages/compression.scm (sfarklib)[source]: Download using git-fetch.
* gnu: cinnamon-desktop: Don't use unstable tarball.Efraim Flashner2019-11-25
| | | | | * gnu/packages/cinnamon.scm (cinnamon-desktop)[source]: Download using git-fetch.
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