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* gnu: emacs-wget: Adjust indentation.Brett Gilio2019-12-27
| | | | * gnu/packages/emacs-xyz.scm (emacs-wget): Adjust indentation.
* gnu: emacs-reformatter: Adjust indentation.Brett Gilio2019-12-27
| | | | * gnu/packages/emacs-xyz.scm (emacs-reformatter): Adjust indentation.
* gnu: emacs-dante: Modify version number.Brett Gilio2019-12-27
| | | | * gnu/packages/emacs-xyz.scm (emacs-dante): Use version number matching tag reference.
* gnu: emacs-haskell-mode: Adjust indentation.Brett Gilio2019-12-27
| | | | * gnu/packages/emacs-xyz.scm (emacs-haskell-mode): Adjust indentation.
* gnu: emacs-graphql: Adjust indentation.Brett Gilio2019-12-27
| | | | * gnu/packages/emacs-xyz.scm (emacs-graphql): Adjust indentation.
* gnu: emacs-minions: Update to 0.3.2.Brett Gilio2019-12-27
| | | | * gnu/packages/emacs-xyz.scm (emacs-minions): Update to 0.3.2.
* gnu: emacs-with-editor: Update to 2.9.0.Brett Gilio2019-12-27
| | | | * gnu/packages/emacs-xyz.scm (emacs-with-editor): Update to 2.9.0.
* gnu: emacs-doom-themes: Update to 2.1.6-3.Brett Gilio2019-12-27
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-doom-themes): Update to 2.1.6-3. [arguments]<emacs-batch-disable-compilation>: Add new "material" theme to list of exceptions.
* gnu: emacs-doom-themes: Only disable breaking compilations.Leo Prikler2019-12-27
| | | | | | | | | * gnu/packages/emacs-xyz.scm (emacs-doom-themes)[phases]: <build>: Readd this phase. <disable-breaking-compilation>: Add this phase to work around single file errors in bytecompilation. Signed-off-by: Brett Gilio <brettg@gnu.org>
* guix: emacs-utils: Add emacs-batch-disable-compilation.Leo Prikler2019-12-27
| | | | | | | * guix/build/emacs-utils.scm (emacs-batch-disable-compilation): New procedure. Signed-off-by: Brett Gilio <brettg@gnu.org>
* gnu: r-inspect: Update to 1.16.1.Ricardo Wurmus2019-12-27
| | | | | * gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.1. [propagated-inputs]: Add r-gdata.
* gnu: r-multiassayexperiment: Update to 1.12.1.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.1.
* gnu: r-rgadem: Update to 2.34.1.Ricardo Wurmus2019-12-27
| | | | | * gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.1. [propagated-inputs]: Add r-genomicranges.
* gnu: r-clusterprofiler: Update to 3.14.2.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.2.
* gnu: r-enrichplot: Update to 1.6.1.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.1.
* gnu: r-biocsingular: Update to 1.2.1.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.1.
* gnu: r-affycoretools: Update to 1.58.3.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.3.
* gnu: r-car: Update to 3.0-6.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/statistics.scm (r-car): Update to 3.0-6.
* gnu: r-robust: Update to 0.4-18.2.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/statistics.scm (r-robust): Update to 0.4-18.2.
* gnu: r-bigmemory: Update to 4.5.36.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.36.
* gnu: r-foreign: Update to 0.8-74.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/statistics.scm (r-foreign): Update to 0.8-74.
* gnu: r-slam: Update to 0.1-47.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/cran.scm (r-slam): Update to 0.1-47.
* gnu: r-bibtex: Update to 0.4.2.1.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/cran.scm (r-bibtex): Update to 0.4.2.1.
* gnu: r-topgo: Update to 2.38.1.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/bioinformatics.scm (r-topgo): Update to 2.38.1.
* gnu: r-summarizedexperiment: Update to 1.16.1.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.16.1.
* gnu: r-delayedarray: Update to 0.12.1.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.1.
* gnu: r-biocparallel: Update to 1.20.1.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.20.1.
* gnu: r-shortread: Update to 1.44.1.Ricardo Wurmus2019-12-27
| | | | * gnu/packages/bioinformatics.scm (r-shortread): Update to 1.44.1.
* gnu: guix-data-service: Update to 0.0.1-12.f56935a.Christopher Baines2019-12-27
| | | | * gnu/packages/web.scm (guix-data-service): Update to 0.0.1-12.f56935a.
* doc: Mention "make authenticate".Ludovic Courtès2019-12-27
| | | | | * doc/contributing.texi (Building from Git): Add instructions to run 'git verify-commit' and 'make authenticate'.
* git-authenticate: Keep a local cache of previously-authenticated commits.Ludovic Courtès2019-12-27
| | | | | | | | | | | | | | A list of already-authenticated commits is kept in ~/.cache/guix/authentication. This speeds up subsequent "make authenticate" invocations. * build-aux/git-authenticate.scm (authenticated-commit-cache-file) (previously-authenticated-commits, cache-authenticated-commit): New procedures. (git-authenticate): Define 'authenticated-commits' and pass it as a third argument to 'commit-difference'. Add call to 'cache-authenticated-commit'. Don't display signing stats when STATS is null.
* git: 'commit-difference' takes a list of excluded commits.Ludovic Courtès2019-12-27
| | | | | | | * guix/git.scm (commit-closure): Add 'visited' optional parameter. (commit-difference): Add 'excluded' optional parameter; pass second argument to 'commit-closure'. * tests/git.scm ("commit-difference, excluded commits"): New test.
* Add 'build-aux/git-authenticate.scm'.Ludovic Courtès2019-12-27
| | | | | | | * build-aux/git-authenticate.scm: New file. * Makefile.am (EXTRA_DIST): Add it. (commit_v1_0_1): New variable. (authenticate): New target.
* gnu: emacs-org-contrib: Update to 20191226.Nicolas Goaziou2019-12-27
| | | | * gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 20191226.
* gnu: emacs-org: Update to 9.3.1.Nicolas Goaziou2019-12-27
| | | | * gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.3.1.
* gnu: emacs-telega: Update to 0.5.4.Brett Gilio2019-12-26
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.4. [arguments]: Working around imagemagick and svg is no longer needed. [native-inputs]: Replace emacs-minimal with emacs. This is needed because bytecompilation requires fringe-bitmap support.
* gnu: Add ffmpegthumbs.Hartmut Goebel2019-12-26
| | | | * gnu/packages/kde-multimedia.scm (ffmpegthumbs): New variable.
* gnu: Add audiocd-kio.Hartmut Goebel2019-12-26
| | | | * gnu/packages/kde-multimedia.scm (audiocd-kio): New variable.
* gnu: Add libkcompactdisc.Hartmut Goebel2019-12-26
| | | | * gnu/packages/kde-multimedia.scm (libkcompactdisc): New variable.
* gnu: Add kamoso.Hartmut Goebel2019-12-26
| | | | * gnu/packages/kde-multimedia.scm (kamoso): New variable.
* gnu: Add elisa.Hartmut Goebel2019-12-26
| | | | * gnu/packages/kde-multimedia.scm (elisa): New variable.
* gnu: Add kwave.Hartmut Goebel2019-12-26
| | | | * gnu/packages/kde-multimedia.scm (kwave): New variable.
* gnu: Add kmplayer.Hartmut Goebel2019-12-26
| | | | | | | | | | | | | | `guix lint` reports two CVEs, both are unrelated: - CVE-2018-5200: for vendor "pandora" and some 4.2.2.x version - CVE-2019-9133: windows only (I assume it it alsow relates to the "pandora" vendor, since the version the CVE refers to as "solving the issue" does not exist at KDE.) * gnu/packages/kde-multimedia.scm (kmplayer): New variable. * gnu/packages/patches/kmplayer-aarch64.patch, gnu/packages/patches/kmplayer-upstream_Fix-build-with-Qt-5.9.patch: New files. * gnu/local.mk: Add them.
* gnu: Add kmix.Hartmut Goebel2019-12-26
| | | | * gnu/packages/kde-multimedia.scm (kmix): New variable.
* gnu: Add kaffeine.Hartmut Goebel2019-12-26
| | | | * gnu/packages/kde-multimedia.scm (kaffeine): New variable.
* gnu: Add libkcddb.Hartmut Goebel2019-12-26
| | | | * gnu/packages/kde-multimedia.scm (libkcddb): New variable.
* gnu: Add k3b.Hartmut Goebel2019-12-26
| | | | * gnu/packages/kde-multimedia.scm (k3b): New variable.
* gnu: Add juk.Hartmut Goebel2019-12-26
| | | | * gnu/packages/kde-multimedia.scm (juk): New variable.
* gnu: Add dragon.Hartmut Goebel2019-12-26
| | | | | * gnu/packages/kde-multimedia.scm: New file. * gnu/lokal.mk (MODULES): Add it.
* gnu: Add audiofile.Hartmut Goebel2019-12-26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Patches should fix all CVEs reported by `guix lint`: CVE-2015-7747; CVE-2017-6827, CVE-2017-6828, CVE-2017-6829, CVE-2017-6830, CVE-2017-6831, CVE-2017-6832, CVE-2017-6833, CVE-2017-6834, CVE-2017-6835, CVE-2017-6836, CVE-2017-6837, CVE-2017-6838, CVE-2017-6839; CVE-2018-13440; CVE-2018-17095 Since the patches do not reference to CVEs, it's a bit hard to tell which patch actually closes which CVE. Debian reports all these to be closed by the patches below and NixPkgs provides references. * gnu/packages/audio.scm (audiofile): New variable. * gnu/packages/patches/audiofile-fix-datatypes-in-tests.patch, gnu/packages/patches/audiofile-fix-sign-conversion.patch, gnu/packages/patches/audiofile-CVE-2015-7747.patch, gnu/packages/patches/audiofile-CVE-2018-13440.patch, gnu/packages/patches/audiofile-CVE-2018-17095.patch, gnu/packages/patches/audiofile-Check-the-number-of-coefficients.patch, gnu/packages/patches/audiofile-Fail-on-error-in-parseFormat.patch, gnu/packages/patches/audiofile-Fix-index-overflow-in-IMA.cpp.patch, gnu/packages/patches/audiofile-Fix-multiply-overflow-sfconvert.patch, gnu/packages/patches/audiofile-Fix-overflow-in-MSADPCM-decodeSam.patch, gnu/packages/patches/audiofile-division-by-zero-BlockCodec-runPull.patch, gnu/packages/patches/audiofile-hurd.patch, gnu/packages/patches/audiofile-signature-of-multiplyCheckOverflow.patch: New files. * gnu/local.mk: Add them.
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