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* gnu: r-hdf5array: Update to 1.12.3.Ricardo Wurmus2019-10-18
| | | | * gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.3.
* gnu: r-gwascat: Update to 2.16.1.Ricardo Wurmus2019-10-18
| | | | * gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.16.1.
* gnu: r-ldblock: Update to 1.14.3.Ricardo Wurmus2019-10-18
| | | | * gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.14.3.
* gnu: r-ensembldb: Update to 2.8.1.Ricardo Wurmus2019-10-18
| | | | * gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.8.1.
* gnu: r-keggrest: Update to 1.24.1.Ricardo Wurmus2019-10-18
| | | | * gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.24.1.
* gnu: r-rhdf5: Update to 2.28.1.Ricardo Wurmus2019-10-18
| | | | * gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.28.1.
* gnu: r-rhtslib: Update to 1.16.3.Ricardo Wurmus2019-10-18
| | | | * gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.16.3.
* gnu: r-mlinterfaces: Update to 1.64.1.Ricardo Wurmus2019-10-18
| | | | * gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.64.1.
* gnu: r-rsamtools: Update to 2.0.3.Ricardo Wurmus2019-10-18
| | | | * gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.3.
* gnu: bowtie1: Update to 1.2.3.Ricardo Wurmus2019-10-18
| | | | * gnu/packages/bioinformatics.scm (bowtie1): Update to 1.2.3.
* gnu: guix-data-service: Update to 0.0.1-4.5e2bc7c.Christopher Baines2019-10-18
| | | | * gnu/packages/web.scm (guix-data-service): Update to 0.0.1-4.5e2bc7c.
* gnu: Add httpie.Tanguy Le Carrour2019-10-18
| | | | | | * gnu/packages/python-web.scm (httpie): New variable. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
* gnu: upx: Fix UCL input.Marius Bakke2019-10-18
| | | | | | | UCL is a runtime dependency, and thus should not be a native input. * gnu/packages/compression.scm (upx)[native-inputs]: Move UCL from here ... [inputs]: ... to here.
* gnu: ucl: Build shared library instead of static.Marius Bakke2019-10-18
| | | | | * gnu/packages/compression.scm (ucl)[arguments]: Add "--enable-shared" and "--disable-static" in #:configure-flags.
* gnu: ucl: Update home page.Marius Bakke2019-10-18
| | | | * gnu/packages/compression.scm (ucl)[source, home-page]: Use HTTPS.
* gnu: ucl: Build with the C90 standard.Marius Bakke2019-10-18
| | | | | | | Fixes <https://bugs.gnu.org/37778>. Reported by Pierre Neidhardt <mail@ambrevar.xyz>. * gnu/packages/compression.scm (ucl)[arguments]: New field.
* gnu: encfs: Fix build failure with GCC 7.Marius Bakke2019-10-18
| | | | | | | Fixes <https://bugs.gnu.org/37779>. Reported by Pierre Neidhardt <mail@ambrevar.xyz>. * gnu/packages/crypto.scm (encfs)[arguments]: Add phase 'patch-CMakeLists.txt'.
* gnu: libwacom: Do not build static libraries.Marius Bakke2019-10-18
| | | | * gnu/packages/xdisorg.scm (libwacom)[arguments]: New field.
* gnu: libwacom: Update to 1.1.Marius Bakke2019-10-18
| | | | * gnu/packages/xdisorg.scm (libwacom): Update to 1.1.
* gnu: looking-glass-client: Disable CPU-specific optimizations.Marius Bakke2019-10-18
| | | | | * gnu/packages/virtualization.scm (looking-glass-client)[source](modules, snippet): New fields.
* gnu: opensubdiv: Use a regular versioning pattern.Marius Bakke2019-10-18
| | | | | | * gnu/packages/graphics.scm (opensubdiv)[version]: Use dots instead of underscores between numbers. [source](uri): Adjust accordingly.
* gnu: linux-libre@5.2: Remove.Mark H Weaver2019-10-18
| | | | | | | | | The 5.2 release series has reached end-of-life, and is no longer supported upstream. * gnu/packages/linux.scm (deblob-scripts-5.2, linux-libre-5.2-version) (linux-libre-5.2-pristine-source, linux-libre-5.2-source) (linux-libre-headers-5.2, linux-libre-5.2): Remove variables.
* gnu: linux-libre: Update to 5.3.7.Mark H Weaver2019-10-18
| | | | | * gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.7. (linux-libre-5.3-pristine-source): Update hash.
* gnu: linux-libre@4.19: Update to 4.19.80.Mark H Weaver2019-10-18
| | | | | * gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.80. (linux-libre-4.19-pristine-source): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.150.Mark H Weaver2019-10-18
| | | | | * gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.150. (linux-libre-4.14-pristine-source): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.197.Mark H Weaver2019-10-18
| | | | | * gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.197. (linux-libre-4.9-pristine-source): Update hash.
* gnu: linux-libre@4.4: Update to 4.4.197.Mark H Weaver2019-10-18
| | | | | * gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.197. (linux-libre-4.4-pristine-source): Update hash.
* gnu: lisp: Add most missing source package for Common Lisp libraries.Pierre Neidhardt2019-10-18
| | | | | | | | | * gnu/packages/lisp.scm (cl-parse-js, cl-parse-number, cl-iterate, cl-uglify, cl-cffi, cl-sqlite, cl-cffi-gtk, cl-webkit, cl-iolib, cl-ieee-floats, cl-xml, cl-reexport, cl-dexador, cl-cookie, cl-lisp-namespace, cl-trivial-cltl2, cl-introspect-environment, cl-type-i, cl-optima, cl-fare-quasiquote, cl-trivia, cl-mk-string-metrics, cl-str, cl-xmlspam): New variables.
* news: Add CVE ID.Ludovic Courtès2019-10-18
| | | | * etc/news.scm: Add CVE ID for insecure permissions entry.
* lint: Comment out 'cve' checker.Ludovic Courtès2019-10-18
| | | | * guix/lint.scm (%network-dependent-checkers): Comment out 'cve' checker.
* gnu: Add batctl.Tonton2019-10-18
| | | | | | * gnu/packages/networking.scm (batctl): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add FontManager.Boris A. Dekshteyn2019-10-18
| | | | | | * gnu/packages/fontutils.scm (fontmanager): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* pull: Call 'ensure-default-profile' after 'set-build-options'.Ludovic Courtès2019-10-18
| | | | | | | | | | This is a followup to 81c580c8664bfeeb767e2c47ea343004e88223c7. * guix/scripts/pull.scm (guix-pull): Move 'ensure-default-profile' call after 'set-build-options-from-command-line' call. This ensures that the 'profiles/per-user/$USER' directory is created before 'ensure-default-profile' is called when 'GUIX_DAEMON_SOCKET' points to a remote TCP daemon.
* gnu: Add ecl-dexador.Guillaume Le Vaillant2019-10-18
| | | | * gnu/packages/lisp.scm (ecl-dexador): New variable.
* gnu: Add ecl-trivial-mimes.Guillaume Le Vaillant2019-10-18
| | | | * gnu/packages/lisp.scm (ecl-trivial-mimes): New variable.
* gnu: sbcl-trivial-mimes: Fix 'fix-paths' phase.Guillaume Le Vaillant2019-10-18
| | | | | * gnu/packages/lisp.scm (sbcl-trivial-mimes)[arguments]: Use '(%lisp-type)' instead of hard coded 'sbcl' in 'fix-paths' phase.
* build-system/asdf: Fix package transform.Guillaume Le Vaillant2019-10-18
| | | | | | * guix/build-system/asdf.scm (package-with-build-system): [find-input-package]: New function. [rewrite]: Use it.
* gnu: Add arrows.Guillaume Le Vaillant2019-10-18
| | | | * gnu/packages/lisp.scm (cl-arrows, sbcl-arrows, ecl-arrows): New variables.
* gnu: cl+ssl: Update to 0.0.0-1.141ae91.Guillaume Le Vaillant2019-10-18
| | | | | * gnu/packages/lisp.scm (sbcl-cl+ssl): Update to 0.0.0-1.141ae91. [inputs]: Add alexandria and trivial-features.
* Fix documentation of delete_after in the getmail service.Florian Pelz2019-10-18
| | | | | * doc/guix.texi (Getmail service): Remove the word `not'. * gnu/services/getmail.scm (getmail-options-configuration): Ditto.
* gnu: emacs-helm-sly: Fix hash.Brian Leung2019-10-18
| | | | * gnu/packages/emacs-xyz.scm (emacs-helm-sly): Fix hash.
* gnu: Add emacs-minibuffer-line.Joseph LaFreniere2019-10-18
| | | | * gnu/packages/emacs-xyz.scm (emacs-minibuffer-line): New variable.
* gnu: sunxi-tools: Adapt to cross-compiler toolchain changes.Danny Milosavljevic2019-10-18
| | | | | * gnu/packages/admin.scm (sunxi-tools)[arguments]<#:phases>[set-environment-up]: Adapt to cross-compiler toolchain changes.
* gnu: neovim: Remove unneeded reference.Julien Lepiller2019-10-17
| | | | | gnu/packages/vim.scm (neovim)[arguments]: Add a phase to remove a reference to the compiler.
* gnu: Exim: Update to 4.92.3 [fixes CVE-2019-16928].Leo Famulari2019-10-17
| | | | * gnu/packages/mail.scm (exim): Update to 4.92.3.
* doc: Remove 'maintainers' field from package documentation.Christopher Baines2019-10-17
| | | | | | The field itself was removed in 154f1f0937754fafac0c6288dd458b66b332e6bb. * doc/guix.texi (package Reference): Remove 'maintainers' field.
* gnu: Add minisign.Tanguy Le Carrour2019-10-17
| | | | | | * gnu/packages/crypto.scm (minisign): New public variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
* gnu: ucx: Build verbosely.Ludovic Courtès2019-10-17
| | | | * gnu/packages/fabric-management.scm (ucx)[arguments]: Add #:make-flags.
* gnu: ucx: Disable optimizations specific to the build machine.Ludovic Courtès2019-10-17
| | | | | * gnu/packages/fabric-management.scm (ucx)[arguments]: Replace "--enable-optimizations" with "--disable-optimizations".
* gnu: Add emacs-helm-sly.Pierre Neidhardt2019-10-17
| | | | * gnu/packages/emacs-xyz.scm (emacs-helm-sly): New variable.
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