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* git-download: Rewrite 'git-predicate' using Guile-Git.Ludovic Courtès2018-09-13
| | | | | | | | | | Fixes <https://bugs.gnu.org/27925>. * guix/git-download.scm (files->directory-tree) (directory-in-tree?): Remove. (git-file-list): New procedures. (git-predicate): Use it instead of opening a pipe to 'git'. Remove directory tree hack and rely exclusively on inode/device numbers.
* gnu: rust@1.19.0: Remove superfluous install-file call.Danny Milosavljevic2018-09-12
| | | | | * gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Remove superfluous install-file call.
* gnu: rust@1.19.0: Install rustdoc.Danny Milosavljevic2018-09-12
| | | | | * gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[install]: Install rustdoc.
* gnu: rust@1.19.0: Use match-lambda directly.Danny Milosavljevic2018-09-12
| | | | | | | Follow-up to 3159ef7c99c646b78b04cedb1bd3525c301ef978. * gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Use match-lambda directly.
* gnu: gnurl: Update to 7.61.1.Nils Gillmann2018-09-12
| | | | | | * gnu/packages/gnunet.scm (gnurl): Update to 7.61.1. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Zsh: Remove workaround required for Zsh 5.6.Leo Famulari2018-09-12
| | | | | | | This is a followup to commit 5a5d3e356311620df253d7c213c1bda79cd20128. * gnu/packages/shells.scm (zsh)[arguments]: Remove substitutions in 'patch-test' phase.
* gnu: emacs-hl-todo: Update to 1.9.0.Pierre Neidhardt2018-09-12
| | | | * gnu/packages/emacs.scm (emacs-hl-todo): Update to 1.9.0.
* gnu: python-scikit-learn: Update to 0.19.2.Ricardo Wurmus2018-09-12
| | | | | | | | * gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.19.2. [source]: Fetch from git. [arguments]: Run tests before installation; replace "check" phase, add "build-ext" phase; delete "reset-gzip-timestamps" phase. [native-inputs]: Add python-pytest and python-pandas; remove python-nose.
* gnu: Add emacs-blimp.Pierre Neidhardt2018-09-12
| | | | * gnu/packages/emacs.scm (emacs-blimp): New variable.
* gnu: Add emacs-org-web-tools.Pierre Neidhardt2018-09-12
| | | | * gnu/packages/emacs.scm (emacs-org-web-tools): New variable.
* gnu: Add emacs-youtube-dl.Pierre Neidhardt2018-09-12
| | | | * gnu/packages/emacs.scm (emacs-youtube-dl): New variable.
* gnu: libfilezilla: Update to 0.13.1.Tobias Geerinckx-Rice2018-09-12
| | | | * gnu/packages/ftp.scm (libfilezilla): Update to 0.13.1.
* gnu: sg3-utils: Update to 1.43.Tobias Geerinckx-Rice2018-09-12
| | | | | * gnu/packages/scsi.scm (sg3-utils): Update to 1.43. [license]: Add bsd-2.
* gnu: syslinux: Use HTTPS home page.Tobias Geerinckx-Rice2018-09-12
| | | | * gnu/packages/bootloaders.scm (syslinux)[home-page]: Use HTTPS.
* gnu: syslinux: Use INVOKE.Tobias Geerinckx-Rice2018-09-12
| | | | | * gnu/packages/bootloaders.scm (syslinux)[arguments]: Substitute INVOKE for SYSTEM*.
* gnu: zsh: Update to 5.6.1.Tobias Geerinckx-Rice2018-09-12
| | | | * gnu/packages/shells.scm (zsh): Update to 5.6.1.
* gnu: zsh: Use HTTPS.Tobias Geerinckx-Rice2018-09-12
| | | | * gnu/packages/shells.scm (zsh)[source, home-page]: Use HTTPS.
* gnu: Add perl-mock-config.Tobias Geerinckx-Rice2018-09-12
| | | | * gnu/packages/perl-check.scm (perl-mock-config): New public variable.
* gnu: perl-moosex-getopt: Update to 0.73.Efraim Flashner2018-09-12
| | | | | | * gnu/packages/perl.scm (perl-moosex-getopt): Update to 0.73. [native-inputs]: Add perl-module-build-tiny, perl-path-tiny, perl-test-needs.
* netsurf: Register patch.Eric Bavier2018-09-11
| | | | | | Follow-up to f9e140a243b6d6b5d28bd0813b69604562a39653. * gnu/local.mk (dist_patch_DATA): Add netsurf-message-timestamp.patch.
* mpi: Factorize openmpi setup build phase.Eric Bavier2018-09-11
| | | | | | | * gnu/packages/mpi.scm (%openmpi-setup): New variable. * gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi) (superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental) (sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases.
* font-fantasque-sans: Upgrade to 1.7.2.Eric Bavier2018-09-11
| | | | | | | * gnu/packages/fonts.scm (font-fantasque-sans): Upgrade to 1.7.2. [native-inputs]: Add zip. [arguments]: Add 'xrange->range phase for python3 compatibility. Adjust install phase to work with newly generated font variants.
* gnu: emacs-helm: Update to 3.0.Pierre Neidhardt2018-09-11
| | | | * gnu/packages/emacs.scm (emacs-helm): Update to 3.0.
* gnu: Add emacs-hackernews.Pierre Neidhardt2018-09-11
| | | | * gnu/packages/emacs.scm (emacs-hackernews): New variable.
* gnu: emacs-evil-collection: Update to 20180911.Pierre Neidhardt2018-09-11
| | | | * gnu/packages/emacs.scm (emacs-evil-collection): Update to 20180911.
* gnu: emacs-magit-todos: Update to 1.1.Pierre Neidhardt2018-09-11
| | | | * gnu/packages/emacs.scm (emacs-magit-todos): Update to 1.1.
* gnu: emacs-helm-system-packages: Update to 1.10.1.Pierre Neidhardt2018-09-11
| | | | * gnu/packages/emacs.scm (emacs-helm-system-packages): Update to 1.10.1.
* guix: Do not close current-error-port.Ricardo Wurmus2018-09-11
| | | | | | | | Reported-by: Ludovic Courtès <ludo@gnu.org>. * guix/scripts/build.scm (guix-build), guix/scripts/package.scm (guix-package): Duplicate port before handing it to build-output-port.
* ui: Do not filter hash mismatch lines.Ricardo Wurmus2018-09-11
| | | | | | | Reported by Pjotr Prins <pjotr.public12@thebird.nl>. * guix/ui.scm (build-output-port): Add pattern for hash mismatch error; be more careful with error messages in verbose mode.
* gnu: mes: Oops, use mirror://gnu download url.Jan Nieuwenhuizen2018-09-11
| | | | * gnu/packages/mes.scm (mes): Oops, use mirror://gnu download url.
* gnu: snakemake: Update home page.Tobias Geerinckx-Rice2018-09-11
| | | | * gnu/packages/python.scm (snakemake)[home-page]: Update.
* gnu: snakemake: Update to 5.2.2.Tobias Geerinckx-Rice2018-09-11
| | | | * gnu/packages/python.scm (snakemake): Update to 5.2.2.
* gnu: obnam: Add deprecation warning.Tobias Geerinckx-Rice2018-09-11
| | | | | * gnu/packages/backup.scm (obnam)[synopsis, description]: Note its retirement.
* gnu: unbound: Update to 1.8.0.Tobias Geerinckx-Rice2018-09-11
| | | | * gnu/packages/dns.scm (unbound): Update to 1.8.0.
* gnu: perl-dbd-mysql: Update to 4.047.Tobias Geerinckx-Rice2018-09-11
| | | | | * gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.047. [arguments]: Add 'skip-library-detection' phase.
* gnu: libreoffice: Update to 6.1.0.3.Jonathan Brielmaier2018-09-11
| | | | | | | | * gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.0.3. [source]: Correct indenting. [inputs]: Add libnumbertext and python-lxml. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add libnumbertext.Jonathan Brielmaier2018-09-11
| | | | | | * gnu/packages/libreoffice.scm (libnumbertext): New public variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: arpack-ng-openmpi: Fix build.Paul Garlick2018-09-11
| | | | | | | * gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Add 'set-test-environment phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-irony-mode.Tim Gesthuizen2018-09-11
| | | | | | | * gnu/packages/emacs.scm (emacs-irony-mode): New variable. (emacs-irony-mode-server): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: jupyter-guile-kernel: Add dependencies to the search path.Ludovic Courtès2018-09-11
| | | | | | | | | | | | | | This allows: guix environment --ad-hoc jupyter jupyter-guile-kernel \ -- jupyter notebook to work out-of-the-box. * gnu/packages/guile.scm (jupyter-guile-kernel)[arguments]: In 'install-kernel' phase, add '-L' and '-C' flags to 'kernel.json'. [propagated-inputs]: Remove. [inputs]: Add GUILE-JSON and GUILE-SIMPLE-ZMQ.
* gnu: guile-simple-zmq, jupyter-guile-kernel: Update to 5bb66a0 and a7db924.Ludovic Courtès2018-09-11
| | | | | * gnu/packages/guile.scm (guile-simple-zmq): Update to 5bb66a0. (jupyter-guile-kernel): Update to a7db924.
* gnu: Add r-svgui.Mădălin Ionel Patrașcu2018-09-11
| | | | | | * gnu/packages/cran.scm (r-svgui): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: spice: Update to 0.14.1 [fixes CVE-2018-10873].Marius Bakke2018-09-11
| | | | | | | | * gnu/packages/spice.scm (spice): Update to 0.14.1. [source](uri): Update to new "spice-server" subdirectory. [native-inputs]: Add GLIB-NETWORKING and GSETTINGS-DESKTOP-SCHEMAS. [arguments]: Remove configure-flag which is now off even when celt is available. Add phase to set $SSL_CERT_FILE.
* gnu: usbredir: Update to 0.8.0.Marius Bakke2018-09-11
| | | | | | | * gnu/packages/spice.scm (usbredir): Update to 0.8.0. [source]: Use URL-FETCH. [native-inputs]: Remove AUTOCONF, AUTOMAKE and LIBTOOL. [arguments]: Remove.
* gnu: syncthing: Update to 0.14.50.Leo Famulari2018-09-11
| | | | * gnu/packages/syncthing.scm (syncthing): Update to 0.14.50.
* gnu: go-github-com-syncthing-notify: Update to 0.0.0-2.b76b458.Leo Famulari2018-09-11
| | | | | * gnu/packages/syncthing.scm (go-github-com-syncthing-notify): Update to 0.0.0-2.b76b458.
* gnu: VLC: Update to 3.0.4.Leo Famulari2018-09-10
| | | | * gnu/packages/video.scm (vlc): Update to 3.0.4.
* gnu: git: Update to 2.19.0.Leo Famulari2018-09-10
| | | | | * gnu/packages/version-control.scm (git): Update to 2.19.0. (cgit)[inputs]: Use the source of Git 2.18.0.
* profiles: Correctly deal with etc/ being a relative symlink.Ludovic Courtès2018-09-11
| | | | | | | | | | | | Fixes <https://bugs.gnu.org/32686>. Reported by Oleg Pykhalov <go.wigust@gmail.com>. * guix/build/profiles.scm (ensure-writable-directory): Add #:symlink. [absolute?]: New procedure. [unsymlink]: Use it to determine how to resolve readlink's result. (build-profile): Pass SYMLINK to 'ensure-writable-directory'. * tests/profiles.scm ("profile-derivation when etc/ is a relative symlink"): New test.
* gnu: Add r-abd.pimi2018-09-11
| | | | | | * gnu/packages/cran.scm (r-abd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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