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* gnu: r-dnacopy: Update to 1.50.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.0.
* gnu: r-bioccheck: Update to 1.12.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.12.0.
* gnu: r-biocstyle: Update to 2.4.0.Roel Janssen2017-04-28
| | | | | * gnu/packages/bioinformatics.scm (r-biocstyle): [source] Update to 2.4.0. [propagated-inputs]: Add r-bookdown, r-knitr, r-rmarkdown, r-yaml.
* gnu: r-biocviews: Update to 1.44.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.44.0.
* gnu: r-biocinstaller: Update to 1.26.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.26.0.
* gnu: r-biocgenerics: Update to 0.22.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.22.0.
* gnu: r-grohmm: Update to 1.10.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.10.0.
* gnu: r-systempiper: Update to 1.10.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.10.0.
* gnu: r-shortread: Update to 1.34.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-shortread): Update to 1.34.0.
* gnu: r-gostats: Update to 2.42.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-gostats): Update to 2.42.0.
* gnu: r-category: Update to 2.42.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-category): Update to 2.42.0.
* gnu: r-gseabase: Update to 1.38.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.38.0.
* gnu: r-rbgl: Update to 1.52.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.52.0.
* gnu: r-annotationforge: Update to 1.18.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.0.
* gnu: r-deseq2: Update to 1.16.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.0.
* gnu: r-genefilter: Update to 1.58.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.58.0.
* gnu: r-geneplotter: Update to 1.54.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.54.0.
* gnu: r-annotate: Update to 1.54.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-annotate): Update to 1.54.0.
* import: Update Bioconductor release to 3.5.Roel Janssen2017-04-28
| | | | * guix/import/cran.scm: Change Bioconductor release to 3.5.
* gnu: Add r-genomeinfodbdata.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-genomeinfodbdata): New variable.
* gnu: Add r-delayedarray.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-delayedarray): New variable.
* gnu: Add r-bookdown.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-bookdown): New variable.
* gnu: linux-libre: Update to 4.10.13.Mark H Weaver2017-04-28
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.13. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.25.Mark H Weaver2017-04-28
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.25.
* gnu: linux-libre@4.4: Update to 4.4.64.Mark H Weaver2017-04-28
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.64.
* gnu: serf: Update to 1.3.9.Marius Bakke2017-04-27
| | | | | | | | * gnu/packages/patches/serf-comment-style-fix.patch, gnu/packages/patches/serf-deflate-buckets-test-fix.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/web.scm (serf): Update to 1.3.9. [source]: Remove patches.
* gnu: serf: Disable expired SSL tests.Marius Bakke2017-04-27
| | | | | | Fixes <https://bugs.gnu.org/26671>. * gnu/packages/web.scm (serf)[arguments]<#:phases>: Add 'disable-broken-tests'.
* gnu: kodi: Update to 18.0_alpha-3-749c61e.Marius Bakke2017-04-27
| | | | * gnu/packages/kodi.scm (kodi): Update to 18.0_alpha-3-749c61e.
* gnu: tor: Update to 0.3.0.6.Tobias Geerinckx-Rice2017-04-27
| | | | * gnu/packages/tor.scm (tor): Update to 0.3.0.6.
* gnu: simple-scan: Update to 3.24.1.Tobias Geerinckx-Rice2017-04-27
| | | | * gnu/packages/gnome.scm (simple-scan): Update to 3.24.1.
* gnu: Add mdbtools.Arun Isaac2017-04-27
| | | | * gnu/packages/databases.scm (mdbtools): New variable.
* Merge branch 'staging'Leo Famulari2017-04-27
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| * Merge branch 'master' into stagingLeo Famulari2017-04-25
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| * | gnu: xorg-server@1.19.3: Correct hash.Marius Bakke2017-04-24
| | | | | | | | | | | | | | | | | | This hash got reset back to 1.19.2 when 1f49cd546ec was merged (1524851f58d). * gnu/packages/xorg.scm (xorg-server-1.19.3)[source]: Update sha256 checksum.
| * | Merge branch 'master' into stagingLeo Famulari2017-04-22
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| * | | gnu: libsamplerate: Correct license after 0.1.9 update.Marius Bakke2017-04-21
| | | | | | | | | | | | | | | | | | | | | | | | This is a followup to e1f68c96685fd607fcf00f08edd2f9cdfafabe2e. * gnu/packages/pulseaudio.scm (libsamplerate)[license]: Change GPL2+ to BSD-2.
| * | | gnu: mesa: Fix build for 32-bit systems.Leo Famulari2017-04-18
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/mesa-fix-32bit-test-failures.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gl.scm (mesa)[source]: Use it.
| * | | gnu: libsndfile: Fix build failure on armhf.Marius Bakke2017-04-18
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/libsndfile-armhf-type-checks.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pulseaudio.scm (libsndfile)[source]: Use it.
| * | | Merge branch 'master' into stagingMarius Bakke2017-04-18
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| * | | | gnu: gtk+: Update to 3.22.12.Kei Kebreau2017-04-17
| | | | | | | | | | | | | | | | | | | | * gnu/packages/gtk.scm (gtk+): Update 3.22.12.
| * | | | gnu: mesa: Update to 17.0.4.Marius Bakke2017-04-17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/mesa-skip-disk-cache-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gl.scm (mesa): Update to 17.0.4. [source]: Adapt URI to new directory structure. [arguments]: End phases on #t. Remove stray whitespaces. [home-page]: Use HTTPS.
| * | | | gnu: libdrm: Update to 2.4.80.Marius Bakke2017-04-17
| | | | | | | | | | | | | | | | | | | | * gnu/packages/xdisorg.scm (libdrm): Update to 2.4.80.
| * | | | gnu: gdk-pixbuf: Update to 2.36.6.Kei Kebreau2017-04-15
| | | | | | | | | | | | | | | | | | | | * gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.36.6.
| * | | | Merge branch 'master' into stagingLeo Famulari2017-04-14
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| * | | | | gnu: libva: Update to 1.8.1.Marius Bakke2017-04-13
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/video.scm (libva): Update to 1.8.1.
| * | | | | gnu: libdrm: Update to 2.4.79.Marius Bakke2017-04-12
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/xdisorg.scm (libdrm): Update to 2.4.79.
| * | | | | gnu: libsamplerate: Update to 0.1.9.Marius Bakke2017-04-12
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/pulseaudio.scm (libsamplerate): Update to 0.1.9.
| * | | | | gnu: xorg-server@1.19.2: Update to 1.19.3.Marius Bakke2017-04-06
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This is to adjust for the inputs and arguments change of xorg-server proper. * gnu/packages/xorg.scm (xorg-server-1.19.2): Rename to ... (xorg-server-1.19.3): ... this. Update version and origin. * gnu/packages/gtk.scm (gtk+)[native-inputs]: Adjust accordingly. [arguments]<#:disallowed-references>: Likewise.
| * | | | | gnu: xorg-server: Update to 1.19.3.Marius Bakke2017-04-06
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/xorg.scm (xorg-server, xorg-server-xwayland): Update to 1.19.3. [native-inputs]: Remove FONT-UTIL, LIBTOOL, AUTOMAKE and AUTOCONF. [arguments]: Remove 'bootstrap' phase.
| * | | | | gnu: libdrm: Update to 2.4.77.Marius Bakke2017-04-06
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/xdisorg.scm (libdrm): Update to 2.4.77. * gnu/packages/patches/libdrm-symbol-check.patch: Adjust to upstream changes.
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