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* gnu: Add libBigWig.Ricardo Wurmus2016-02-25
| | | | * gnu/packages/bioinformatics.scm (libbigwig): New variable.
* gnu: guile-json: Update to 0.5.0.Jan Nieuwenhuizen2016-02-25
| | | | | | * gnu/packages/guile.scm (guile-json): Update to 0.5.0. Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu: ardour: Update to 4.7.Ricardo Wurmus2016-02-25
| | | | * gnu/packages/audio.scm (ardour): Update to 4.7.
* gnu: xdg-utils: Propagate xprop and xset.宋文武2016-02-25
| | | | | | Fixes <http://bugs.gnu.org/22755>. * gnu/packages/freedesktop.scm (xdg-utils): Propagate xprop and xset.
* doc: Improve recent changes in "Binary Installation".Ludovic Courtès2016-02-24
| | | | | | | | This amends part of c8e2688. * doc/guix.texi (Binary Installation): Improve wording of some parts. Fix Upstart example. Remove incorrect paragraph about locales. Reinstate bit about reproducing the binary tarball.
* doc: Clarify who can run 'guix pull'.Ludovic Courtès2016-02-24
| | | | | | | Suggested by Chris Marusich <cmmarusich@gmail.com>. * doc/guix.texi (Invoking guix pull): Add paragraph explaining that any user can run 'guix pull'.
* gnu: libssh: Update to 0.7.3 [fixes CVE-2016-0739].Leo Famulari2016-02-24
| | | | | | | | | | | | | * gnu/packages/patches/libssh-CVE-2014-0017.patch: Delete file. * gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: New file. * gnu-system.am (dist_patch_DATA): Adjust accordingly. * gnu/packages/ssh.scm (libssh): Update to 0.7.3. (libssh-0.5): Rename to... (libssh-0.6): ... this. Update to 0.6.5. [source]: Add patch for CVE-2016-0739. (guile-ssh)[inputs]: Use libssh-0.6. Modified-By: Mark H Weaver <mhw@netris.org>
* gnu: libssh2: Update to 1.7.0 [fixes CVE-2016-0787].Leo Famulari2016-02-24
| | | | | | | | * gnu/packages/ssh.scm (libssh2): Update to 1.7.0. (libssh2-1.4): New variable. * gnu/packages/curl.scm (curl)[inputs]: Use libssh4-1.4. Modified-By: Mark H Weaver <mhw@netris.org>
* doc: Add details for binary installation.George Clemmer2016-02-24
| | | | | | | * doc/guix.texi (Binary Installation): Provide some more details for binary installation, in particular automatic starting of the daemon. Signed-off-by: Andreas Enge <andreas@enge.fr>
* doc: Fix minor typos and add missing words.Chris Marusich2016-02-24
| | | | | | | | | * doc/guix.texi (Shepherd Services): Add missing words. (Invoking guix system): Fix typo. (Service Types and Services): Fix typo. * doc/contributing.texi (Submitting Patches): Fix typo. Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu: gdb: Update to 7.11.Efraim Flashner2016-02-24
| | | | * gnu/packages/gdb.scm (gdb): Update to 7.11.
* gnu: kde-frameworks: Update to 5.19.0.Efraim Flashner2016-02-24
| | | | | * gnu/packages/kde-frameworks.scm (kwindowsystem): Update to 5.19.0. (extra-cmake-modules): Update to 5.19.0.
* gnu: r-topgo: Add missing input.Ricardo Wurmus2016-02-24
| | | | | * gnu/packages/bioinformatics.scm (r-topgo)[propagated-inputs]: Add "r-graph".
* gnu: Add r-graph.Ricardo Wurmus2016-02-24
| | | | * gnu/packages/bioinformatics.scm (r-graph): New variable.
* gnu: Add r-org-mm-eg-db.Ricardo Wurmus2016-02-24
| | | | * gnu/packages/bioinformatics.scm (r-org-mm-eg-db): New variable.
* gnu: Add r-org-dm-eg-db.Ricardo Wurmus2016-02-24
| | | | * gnu/packages/bioinformatics.scm (r-org-dm-eg-db): New variable.
* gnu: Add r-org-ce-eg-db.Ricardo Wurmus2016-02-24
| | | | * gnu/packages/bioinformatics.scm (r-org-ce-eg-db): New variable.
* gnu: Add r-org-hs-eg-db.Ricardo Wurmus2016-02-24
| | | | * gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
* Do not check package freshness during upgrade.Alex Kost2016-02-24
| | | | | | | | | Fixes <http://bugs.gnu.org/22740>. Reported by Andreas Enge <andreas@enge.fr>. * gnu/packages.scm (waiting, ftp-open*, check-package-freshness): Remove. * guix/scripts/package.scm (options->installable): Adjust accordingly. * emacs/guix-main.scm (package->manifest-entry*): Likewise.
* publish: Move 'query-path-info' call where it belongs.Ludovic Courtès2016-02-24
| | | | | | * guix/scripts/publish.scm (narinfo-string): Remove 'path-info' parameter and add 'store' parameter. Call 'query-path-info'. (render-narinfo): Adjust accordingly.
* gnu: lsh: lshd now supports X11 forwarding.Ludovic Courtès2016-02-24
| | | | | | | Reported by myglc2 <myglc2@gmail.com>. * gnu/packages/lsh.scm (lsh)[inputs]: Add XAUTH. [arguments]: Modify 'XAUTH_PROGRAM' macro in 'server_x11.c'.
* gnu: lsh: Use 'modify-phases'.Ludovic Courtès2016-02-24
| | | | | * gnu/packages/lsh.scm (lsh)[arguments]: Use 'modify-phases' instead of 'alist-cons-before'.
* gnu: services: Install policies for polkit service.Andy Wingo2016-02-24
| | | | | | * gnu/services/desktop.scm (polkit-etc-files): Add the polkit package itself to the list of packages to scan for .policy files. This add support for pkexec.
* mplayer: Use 'modify-phases'.Efraim Flashner2016-02-24
| | | | | | * gnu/packages/video.scm (mplayer)[arguments]: Use 'modify-phases'. [source]: Use https. [home-page]: Use https.
* gnu: mplayer: Add codecs.Efraim Flashner2016-02-24
| | | | | * gnu/packages/video.scm (mplayer)[inputs]: Add libass, libmpeg2, libvdpau, libx264, opus.
* gnu: dropbear: Update to 2015.71.Efraim Flashner2016-02-24
| | | | * gnu/packages/ssh.scm (dropbear): Update to 2015.71.
* gnu: guile-next: Set correct native search paths.David Thompson2016-02-23
| | | | | * gnu/packages/guile.scm (guile-next): Use the "2.2" directory for the load paths.
* services: herd: Add missing newlines in error messages.Ludovic Courtès2016-02-23
| | | | | * gnu/services/herd.scm (report-action-error): Add missing newlines in messages.
* refresh: Remove unneeded import.Ludovic Courtès2016-02-23
| | | | | | | | | Reported by Leo Famulari <leo@famulari.name> and Ben Woodcroft <b.woodcroft@uq.edu.au> at <http://bugs.gnu.org/22752>. * guix/scripts/refresh.scm: Remove unneeded and harmful import of (guix import gem).
* doc: Add example of VCS-snapshot version numbers.Ludovic Courtès2016-02-23
| | | | * doc/guix.texi (Version Numbers): Add example for VCS version numbers.
* gnu: Add xfce4-xkb-plugin.Andreas Enge2016-02-23
| | | | | * gnu/packages/xfce.scm (xfce4-xkb-plugin): New variable. (xfce)[propagated-inputs]: Add it.
* gnu: telepathy-logger: Disable parallel tests.Leo Famulari2016-02-23
| | | | | * gnu/packages/freedesktop.scm (telepathy-logger)[arguments]: Disable parallel tests.
* gnu: Add rdmd.Roel Janssen2016-02-23
| | | | | | * gnu/packages/ldc.scm (rdmd): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: modem-manager: Use HTTPS URL.Leo Famulari2016-02-23
| | | | * gnu/packages/freedesktop.scm (modem-manager)[source]: Use HTTPS URL.
* gnu: mpd: Update to 0.19.12.Leo Famulari2016-02-22
| | | | * gnu/packages/mpd.scm (mpd): Update t0 0.19.12.
* gnu: ncmpcpp: Udate to 0.7.3.Leo Famulari2016-02-22
| | | | | * gnu/packages/mpd.scm (ncmpcpp): Update to 0.7.3. [inputs]: Add icu4c.
* gnu: ncmpcpp: Use 'modify-phases'.Leo Famulari2016-02-22
| | | | * gnu/packages/mpd.scm (ncmpcpp)[arguments]: Use 'modify-phases'.
* vm: Only pass "-enable-kvm" to qemu if /dev/kvm is present.Christopher Allan Webber2016-02-22
| | | | | | | | Fixes <http://bugs.gnu.org/22633>. * gnu/build/vm.scm (load-in-linux-vm): Only pass "-enable-kvm" flag to qemu if "/dev/kvm" is present. * gnu/system/vm.scm (common-kvm-options): Same as above.
* gnu: pkg-config: Add non-HTTPS alternate URL.Ludovic Courtès2016-02-22
| | | | * gnu/packages/pkg-config.scm (%pkg-config)[source]: Add non-HTTPS URL.
* grafts: 'name' parameter of 'graft-derivation' is now optional.Ludovic Courtès2016-02-22
| | | | | | | | * guix/grafts.scm (graft-derivation): Name 'name' a keyword parameter. * guix/packages.scm (package-derivation, package-cross-derivation): Adjust accordingly. * tests/grafts.scm ("graft-derivation"): Likewise. * tests/packages.scm ("package-derivation, indirect grafts"): Likewise.
* derivations: Move grafts to (guix grafts).Ludovic Courtès2016-02-22
| | | | | | | | | | | | * guix/derivations.scm (<graft>, graft-derivation, %graft?) (set-grafting): Move to... * guix/grafts.scm: ... here. New file. * guix/gexp.scm, guix/packages.scm, tests/packages.scm, guix/scripts/build.scm: Use it. * Makefile.am (MODULES): Add it. (SCM_TESTS): Add tests/grafts.scm. * tests/derivations.scm ("graft-derivation"): Move to... * tests/grafts.scm: ... here. New file.
* gnu: Remove python2-pyqt-4.Andreas Enge2016-02-22
| | | | | * gnu/packages/qt.scm (python2-pyqt-4): Delete variable. It depends on Qt 4, which does not receive security updates any more.
* gnu: Remove KDE 4.Andreas Enge2016-02-22
| | | | | | | | | | | * gnu/packages/kde.scm (qjson): Move from here... * gnu/packages/qt.scm (qjson): ...to here. * gnu/packages/pumpio.scm: Drop inclusion of (gnu packages kde). * gnu/packages/kde.scm: Delete file. * gnu-system.am (GNU_SYSTEM_MODULES): Unregister it. * gnu/packages/rdf.scm (soprano): Delete variable. KDE 4 relies on Qt 4, which does not receive security updates any more.
* gnu: python-patsy: Define 'python2-variant'.Efraim Flashner2016-02-22
| | | | | * gnu/packages/statistics.scm (python-patsy)[properties]: New field. (python2-patsy): Use 'strip-python2-variant'.
* gnu: python-patsy: Update to 0.4.1.Efraim Flashner2016-02-22
| | | | * gnu/packages/statistics.scm (python-patsy, python2-patsy): Update to 0.4.1.
* emacs: Do not allow a user to modify system profiles.Alex Kost2016-02-22
| | | | | | | | | | | | | | | Fixes <http://bugs.gnu.org/22607>. Reported by myglc2 <myglc2@gmail.com>. Remove possibilities to install/delete packages to/from a system profile both for "Package List" and "Package Info" buffers. * emacs/guix-profiles.el (guix-system-profile-regexp): New variable. (guix-system-profile?): New procedure. * emacs/guix-ui-package.el (guix-package-info-insert-output): Do not display "Install"/"Delete" button for a system profile. (guix-package-assert-non-system-profile): New procedure. (guix-package-execute-actions): Use it.
* emacs: Set 'guix-buffer-item' before displaying entries.Alex Kost2016-02-22
| | | | | | | * emacs/guix-buffer.el (guix-buffer-set): Set 'guix-buffer-item' early, so that it can be used during displaying entries. For example, this allows us to use a value of the current guix profile when package entries are inserted in a "List" or "Info" buffer.
* emacs: Add 'M-x guix-installed-{user/system}-packages'.Alex Kost2016-02-22
| | | | | | * emacs/guix-ui-package.el (guix-installed-user-packages) (guix-installed-system-packages): New commands. * doc/emacs.texi (Emacs Commands): Document them.
* gnu: qemu: Add fixes for CVE-2015-8619, CVE-2016-1981, CVE-2016-2197.Mark H Weaver2016-02-22
| | | | | | | | | * gnu/packages/patches/qemu-CVE-2015-8619.patch, gnu/packages/patches/qemu-CVE-2016-1981.patch, gnu/packages/patches/qemu-CVE-2016-2197.patch, gnu/packages/patches/qemu-usb-ehci-oob-read.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/qemu.scm (qemu)[source]: Add patches.
* gnu: Add gnome-screenshot.Rene Saavedra2016-02-22
| | | | * gnu/packages/gnome.scm (gnome-screenshot): New variable.
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