| Commit message (Expand) | Author | Age |
|---|
| ... | |
| * | gnu: ngs-sdk: Use INVOKE.•••* gnu/packages/bioinformatics.scm (ngs-sdk)[arguments]: Use INVOKE and
return #T unconditionally.
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: emboss: Use INVOKE.•••* gnu/packages/bioinformatics.scm (emboss)[arguments]: Use INVOKE and
return #T unconditionally.
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: taxtastic: Use INVOKE.•••* gnu/packages/bioinformatics.scm (taxtastic)[arguments]: Use INVOKE and
return #T unconditionally.
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: sra-tools: Use INVOKE.•••* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use INVOKE and
return #T unconditionally.
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: muscle: Use INVOKE.•••* gnu/packages/bioinformatics.scm (muscle)[arguments]: Use INVOKE and
return #T unconditionally.
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: newick-utils: Remove custom autoconf phase.•••* gnu/packages/bioinformatics.scm (newick-utils)[arguments]: Remove.
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: mash: Remove custom autoconf phase.•••* gnu/packages/bioinformatics.scm (mash)[arguments]: Remove autoconf phase.
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: vsearch: Remove custom autogen phase.•••* gnu/packages/bioinformatics.scm (vsearch)[arguments]: Remove.
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: java-picard-1.113: Use INVOKE.•••* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Use INVOKE
and return #T unconditionally.
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: fraggenescan: Use INVOKE.•••* gnu/packages/bioinformatics.scm (fraggenescan)[arguments]: Use INVOKE in
build phases and return #T unconditionally.
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: sailfish: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (sailfish)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: ngs-sdk: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (ngs-sdk)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: ncbi-vdb: Use INVOKE and end phases on #T.•••* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use INVOKE and
unconditionally end phases with #T.
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: ncbi-vdb: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (ncbi-vdb)[source]: Fetch from git.
[arguments]: Add phase to make checkout writable.
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: tadbit: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (tadbit)[source]: Fetch from git.
[version]: Use "2.0.0" instead of "2.0".
| Ricardo Wurmus | 2018-11-08 |
| * | gnu: pspp: Update to 1.2.0.•••* gnu/packages/statistics.scm (pspp): Update to 1.2.0.
[inputs]: Add spread-sheet-widget.
[native-inputs]: Add autoconf, python-2, and texinfo.
| Kei Kebreau | 2018-11-07 |
| * | gnu: Add spread-sheet-widget.•••* gnu/packages/gtk.scm (spread-sheet-widget): New public variable.
| Kei Kebreau | 2018-11-07 |
| * | gnu: filevercmp: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (filevercmp)[source]: Fetch from git.
[arguments]: Add #T to the end of the install phase.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: ritornello: Update to 2.0.1.•••* gnu/packages/bioinformatics.scm (ritornello): Update to 2.0.1.
[arguments]: Adjust file patching.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: ritornello: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (ritornello)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: snap-aligner: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (snap-aligner)[source]: Fetch from git.
[arguments]: Use INVOKE.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: sortmerna: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (sortmerna)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: vsearch: Fetch source from git.•••* gnu/packages/bioinformatics.scm (vsearch)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: preseq: Update to 2.0.3.•••* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.3.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: preseq: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (preseq)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: seqtk: Update to 1.3.•••* gnu/packages/bioinformatics.scm (seqtk): Update to 1.3.
[source]: Remove outdated snippet.
[arguments]: Use INVOKE and return #T unconditionally.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: seqtk: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (seqtk)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: raxml: Update to 8.2.12.•••* gnu/packages/bioinformatics.scm (raxml): Update to 8.2.12.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: python2-biom-format: Fix build.•••This is a follow-up to commit 239716fb0ba0a7cd81f9d59dcf5a2261b8efe4fa.
* gnu/packages/bioinformatics.scm (python2-biom-format)[arguments]: Modify
phases of base package.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: raxml: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (raxml)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: pyicoteo: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (pyicoteo)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: hplip: Remove bundled non-free blobs.•••This fixes <https://bugs.gnu.org/32184>.
* gnu/packages/cups.scm (hplip)[source]: Add patch. Update snippet to
remove non-free code and binary blobs.
* gnu/packages/patches/hplip-remove-imageprocessor.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
| Efraim Flashner | 2018-11-07 |
| * | pull: Add missing monadic 'return'.•••Fixes a regression introduced in
5f7dd092ca577a534067f577b8849ed06cabf970 where, upon completion, 'guix
pull' would fail (instead of printing the new/upgraded packages) with
ugly errors like:
successfully built /gnu/store/…-profile.drv
1 package in profile
Backtrace:
[…]
In guix/store.scm:
1605:24 1 (run-with-store _ _ #:guile-for-build _ #:system _ # _)
In unknown file:
0 (_ #<build-daemon 256.97 2476b40>)
ERROR: Wrong type to apply: #t
Reported by thorwil on #guix.
* guix/scripts/pull.scm (build-and-install): Add missing 'return' when
DRY-RUN? is wrong.
| Ludovic Courtès | 2018-11-07 |
| * | gnu: sra-tools: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (sra-tools)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: libgff: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (libgff)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: kentutils: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (kentutils)[source]: Fetch from git.
[arguments]: Add phase "fix-permissions".
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: r-seqgl: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (r-seqgl)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: pplacer: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (pplacer)[source]: Fetch from git.
[arguments]: Make files writable; use INVOKE.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: minced: Update to 0.3.2.•••* gnu/packages/bioinformatics.scm (minced): Update to 0.3.2.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: minced: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (minced)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: metabat: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (metabat)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: mash: Update to 2.1.•••* gnu/packages/bioinformatics.scm (mash): Update to 2.1.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: mash: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (mash)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: fio: Update to 3.11.•••* gnu/packages/benchmark.scm (fio): Update to 3.11.
[source]: Use bz2 compressed tarball.
| Marius Bakke | 2018-11-07 |
| * | gnu: kaiju: Update to 1.6.3.•••* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.3.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: kaiju: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (kaiju)[source]: Fetch from git.
[arguments]: Remove redundant installation step.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: idr: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (idr)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: java-htsjdk: Fetch sources from git.•••* gnu/packages/bioinformatics.scm (java-htsjdk)[source]: Fetch from git.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: hisat2: Use versioned source URL.•••* gnu/packages/bioinformatics.scm (hisat2)[source]: Use versioned URL.
| Ricardo Wurmus | 2018-11-07 |
| * | gnu: grit: Update to 2.0.5.•••* gnu/packages/bioinformatics.scm (grit): Update to 2.0.5.
[arguments]: Simplify.
| Ricardo Wurmus | 2018-11-07 |