diff options
Diffstat (limited to 'guix/build-system/r.scm')
| -rw-r--r-- | guix/build-system/r.scm | 20 |
1 files changed, 14 insertions, 6 deletions
diff --git a/guix/build-system/r.scm b/guix/build-system/r.scm index e7214155be..dd2a9fe8de 100644 --- a/guix/build-system/r.scm +++ b/guix/build-system/r.scm @@ -47,14 +47,22 @@ available via the first URI, the second URI points to the archived version." (string-append "mirror://cran/src/contrib/Archive/" name "/" name "_" version ".tar.gz"))) -(define (bioconductor-uri name version) +(define* (bioconductor-uri name version #:optional type) "Return a URI string for the R package archive on Bioconductor for the release corresponding to NAME and VERSION." - (list (string-append "https://bioconductor.org/packages/release/bioc/src/contrib/" - name "_" version ".tar.gz") - ;; TODO: use %bioconductor-version from (guix import cran) - (string-append "https://bioconductor.org/packages/3.9/bioc/src/contrib/Archive/" - name "_" version ".tar.gz"))) + (let ((type-url-part (match type + ('annotation "/data/annotation") + ('experiment "/data/experiment") + (_ "/bioc")))) + (list (string-append "https://bioconductor.org/packages/release" + type-url-part + "/src/contrib/" + name "_" version ".tar.gz") + ;; TODO: use %bioconductor-version from (guix import cran) + (string-append "https://bioconductor.org/packages/3.9" + type-url-part + "/src/contrib/Archive/" + name "_" version ".tar.gz")))) (define %r-build-system-modules ;; Build-side modules imported by default. |