diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 26ebb0930b..4cc9887d33 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2923,3 +2923,39 @@ profiles (GO and KEGG) of gene and gene clusters.") data in R and Bioconductor containers.") ;; Any version of the LGPL. (license license:lgpl2.1+))) + +(define-public r-annaffy + (package + (name "r-annaffy") + (version "1.54.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "annaffy" version)) + (sha256 + (base32 + "16c6allp4vlx0g3nffanrm0mkkf8s2n31dccw4bflnx2pr81bmd5")))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'remove-reference-to-non-free-data + (lambda _ + (substitute* "DESCRIPTION" + ((", KEGG.db") "")) + #t))))) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-dbi" ,r-dbi) + ("r-go-db" ,r-go-db))) + (home-page "https://bioconductor.org/packages/annaffy/") + (synopsis "Annotation tools for Affymetrix biological metadata") + (description + "This package provides functions for handling data from Bioconductor +Affymetrix annotation data packages. It produces compact HTML and text +reports including experimental data and URL links to many online databases. +It allows searching of biological metadata using various criteria.") + ;; Any version of the LGPL according to the DESCRIPTION file. A copy of + ;; the LGPL 2.1 is included. + (license license:lgpl2.1+))) |