diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 16 |
1 files changed, 15 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 87da4aed15..53239cb697 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -248,7 +248,7 @@ structure of the predicted RNA.") ("python-nose" ,python2-nose) ("python-pysam" ,python2-pysam))) (inputs - `(("htslib" ,htslib) + `(("htslib" ,htslib-1.3) ; At least one test fails on htslib-1.4+. ("samtools" ,samtools) ("bwa" ,bwa) ("grep" ,grep) @@ -3079,6 +3079,20 @@ data. It also provides the bgzip, htsfile, and tabix utilities.") ;; the rest is released under the Expat license (license (list license:expat license:bsd-3)))) +;; This package should be removed once no packages rely upon it. +(define htslib-1.3 + (package + (inherit htslib) + (version "1.3.1") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/samtools/htslib/releases/download/" + version "/htslib-" version ".tar.bz2")) + (sha256 + (base32 + "1rja282fwdc25ql6izkhdyh8ppw8x2fs0w0js78zgkmqjlikmma9")))))) + (define-public idr (package (name "idr") |