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-rw-r--r--gnu/packages/bioconductor.scm34
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e962ad523e..93d68c2a5f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -502,3 +502,37 @@ data, such as that derived from next-generation sequencing machines,
calculating estimated posterior likelihoods of differential expression (or
more complex hypotheses) via empirical Bayesian methods.")
(license license:gpl3)))
+
+(define-public r-chipcomp
+ (package
+ (name "r-chipcomp")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ChIPComp" version))
+ (sha256
+ (base32
+ "0j9nif7z33qdxf347r9wa62hhz8qs09r2p96x3hg5yz30a10ahqs"))))
+ (properties `((upstream-name . "ChIPComp")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
+ ("r-bsgenome-mmusculus-ucsc-mm9" ,r-bsgenome-mmusculus-ucsc-mm9)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-limma" ,r-limma)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://bioconductor.org/packages/ChIPComp")
+ (synopsis "Quantitative comparison of multiple ChIP-seq datasets")
+ (description
+ "ChIPComp implements a statistical method for quantitative comparison of
+multiple ChIP-seq datasets. It detects differentially bound sharp binding
+sites across multiple conditions considering matching control in ChIP-seq
+datasets.")
+ ;; Any version of the GPL.
+ (license license:gpl3+)))