diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 34 |
1 files changed, 24 insertions, 10 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 0f4351d152..74280befea 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -4876,27 +4876,38 @@ toolkits.") three-way Venn diagrams in @code{matplotlib}.") (license license:expat))) -(define-public python2-pysnptools +(define-public python-pysnptools (package - (name "python2-pysnptools") - (version "0.3.13") + (name "python-pysnptools") + (version "0.4.11") (source (origin (method url-fetch) (uri (pypi-uri "pysnptools" version)) (sha256 (base32 - "0lnis5xsl7bi0hz4f7gbicahzi5zlxkc21nk3g374xv8fb5hb3qm")))) + "0gxr0bjix307wvk0qh7vkafbxbzfpdmq0wlswpxyyaymy0fwcypv")))) (build-system python-build-system) (arguments - `(#:python ,python-2 ; only Python 2.7 is supported - #:tests? #f)) ; test files (e.g. examples/toydata.bim) not included + `(#:tests? #f ; no test data are included + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (if tests? + (begin + (add-installed-pythonpath inputs outputs) + (invoke "python3" "pysnptools/test.py")) + #t)))))) (propagated-inputs - `(("python2-numpy" ,python2-numpy) - ("python2-scipy" ,python2-scipy) - ("python2-pandas" ,python2-pandas))) + `(("python-dill" ,python-dill) + ("python-h5py" ,python-h5py) + ("python-numpy" ,python-numpy) + ("python-pandas" ,python-pandas) + ("python-psutil" ,python-psutil) + ("python-scipy" ,python-scipy))) (native-inputs - `(("python2-cython" ,python2-cython))) + `(("python-cython" ,python-cython))) (home-page "http://microsoftgenomics.github.io/PySnpTools/") (synopsis "Library for reading and manipulating genetic data") (description @@ -4906,6 +4917,9 @@ those files. It can also efficiently manipulate ranges of integers using set operators such as union, intersection, and difference.") (license license:asl2.0))) +(define-public python2-pysnptools + (package-with-python2 python-pysnptools)) + (define-public python-socksipy-branch (package (name "python-socksipy-branch") |