diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 21 |
1 files changed, 11 insertions, 10 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0c12e7c874..b0ec57bda2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13238,18 +13238,14 @@ in RNA-seq data.") (define-public python-scanpy (package (name "python-scanpy") - (version "1.4") - ;; Fetch from git because the pypi tarball does not include tests. + (version "1.4.5.1") (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/theislab/scanpy.git") - (commit version))) - (file-name (git-file-name name version)) + (method url-fetch) + (uri (pypi-uri "scanpy" version)) (sha256 (base32 - "0zn6x6c0cnm1a20i6isigwb51g3pr9zpjk8r1minjqnxi5yc9pm4")))) + "14kh1ji70xxhmri5q8sgcibsidhr6f221wxrcw8a5xvibj5da17j")))) (build-system python-build-system) (arguments `(#:phases @@ -13276,18 +13272,23 @@ in RNA-seq data.") ("python-igraph" ,python-igraph) ("python-joblib" ,python-joblib) ("python-louvain" ,python-louvain) + ("python-legacy-api-wrap" ,python-legacy-api-wrap) ("python-matplotlib" ,python-matplotlib) ("python-natsort" ,python-natsort) ("python-networkx" ,python-networkx) ("python-numba" ,python-numba) + ("python-packaging" ,python-packaging) ("python-pandas" ,python-pandas) + ("python-patsy" ,python-patsy) ("python-scikit-learn" ,python-scikit-learn) ("python-scipy" ,python-scipy) ("python-seaborn" ,python-seaborn) ("python-statsmodels" ,python-statsmodels) - ("python-tables" ,python-tables))) + ("python-tables" ,python-tables) + ("python-umap-learn" ,python-umap-learn))) (native-inputs - `(("python-pytest" ,python-pytest))) + `(("python-pytest" ,python-pytest) + ("python-setuptools-scm" ,python-setuptools-scm))) (home-page "https://github.com/theislab/scanpy") (synopsis "Single-Cell Analysis in Python.") (description "Scanpy is a scalable toolkit for analyzing single-cell gene |