diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 355b578623..f0a409d22f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -273,6 +273,36 @@ BED, GFF/GTF, VCF.") (base32 "05vrnr8yp7swfagshzpgqmzk1blnwnq8pq5pckzi1m26w98d63vf")))))) +(define-public ribotaper + (package + (name "ribotaper") + (version "1.3.1") + (source (origin + (method url-fetch) + (uri (string-append "https://ohlerlab.mdc-berlin.de/" + "files/RiboTaper/RiboTaper_Version_" + version ".tar.gz")) + (sha256 + (base32 + "0ykjbps1y3z3085q94npw8i9x5gldc6shy8vlc08v76zljsm07hv")))) + (build-system gnu-build-system) + (inputs + `(("bedtools" ,bedtools-2.18) + ("samtools" ,samtools-0.1) + ("r" ,r) + ("r-foreach" ,r-foreach) + ("r-xnomial" ,r-xnomial) + ("r-domc" ,r-domc) + ("r-multitaper" ,r-multitaper) + ("r-seqinr" ,r-seqinr))) + (home-page "https://ohlerlab.mdc-berlin.de/software/RiboTaper_126/") + (synopsis "Define translated ORFs using ribosome profiling data") + (description + "Ribotaper is a method for defining translated @dfn{open reading +frames} (ORFs) using ribosome profiling (ribo-seq) data. This package +provides the Ribotaper pipeline.") + (license license:gpl3+))) + (define-public bioawk (package (name "bioawk") |