diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 18 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 2 | ||||
| -rw-r--r-- | gnu/packages/graph.scm | 2 |
3 files changed, 11 insertions, 11 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ef34b99649..e2b4f6ea7f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -297,7 +297,7 @@ provided by UCSC (mm9, July 2007) and stored in Biostrings objects.") `(("r-bsgenome" ,r-bsgenome) ("r-bsgenome-mmusculus-ucsc-mm9" ,r-bsgenome-mmusculus-ucsc-mm9))) - (home-page "http://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm9.masked/") + (home-page "https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm9.masked/") (synopsis "Full masked genome sequences for Mouse") (description "This package provides full genome sequences for Mus musculus (Mouse) as @@ -1400,7 +1400,7 @@ problems in genomics, brain imaging, astrophysics, and data mining.") ("r-s4vectors" ,r-s4vectors) ("r-summarizedexperiment" ,r-summarizedexperiment) ("r-systempiper" ,r-systempiper))) - (home-page "http://bioconductor.org/packages/DiffBind") + (home-page "https://bioconductor.org/packages/DiffBind") (synopsis "Differential binding analysis of ChIP-Seq peak data") (description "This package computes differentially bound sites from multiple @@ -1429,7 +1429,7 @@ occupancy (overlap) analysis and plotting functions.") ("r-rsamtools" ,r-rsamtools) ("r-genomicalignments" ,r-genomicalignments) ("r-rtracklayer" ,r-rtracklayer))) - (home-page "http://bioconductor.org/packages/RIPSeeker") + (home-page "https://bioconductor.org/packages/RIPSeeker") (synopsis "Identifying protein-associated transcripts from RIP-seq experiments") (description @@ -1458,7 +1458,7 @@ processing to visualization and annotation.") ("r-biocgenerics" ,r-biocgenerics) ("r-biobase" ,r-biobase) ("r-mass" ,r-mass))) - (home-page "http://bioconductor.org/packages/multtest") + (home-page "https://bioconductor.org/packages/multtest") (synopsis "Resampling-based multiple hypothesis testing") (description "This package can do non-parametric bootstrap and permutation @@ -1569,7 +1569,7 @@ determining dependencies between variables, code improvement suggestions.") ("r-seqinr" ,r-seqinr) ("r-summarizedexperiment" ,r-summarizedexperiment) ("r-venndiagram" ,r-venndiagram))) - (home-page "http://bioconductor.org/packages/ChIPpeakAnno") + (home-page "https://bioconductor.org/packages/ChIPpeakAnno") (synopsis "Peaks annotation from ChIP-seq and ChIP-chip experiments") (description "The package includes functions to retrieve the sequences around the peak, @@ -1594,7 +1594,7 @@ enrichedGO (addGeneIDs).") (build-system r-build-system) (propagated-inputs `(("r-limma" ,r-limma))) - (home-page "http://bioconductor.org/packages/marray") + (home-page "https://bioconductor.org/packages/marray") (synopsis "Exploratory analysis for two-color spotted microarray data") (description "This package contains class definitions for two-color spotted microarray data. It also includes functions for data input, diagnostic plots, @@ -1615,7 +1615,7 @@ normalization and quality checking.") (propagated-inputs `(("r-biobase" ,r-biobase) ("r-marray" ,r-marray))) - (home-page "http://bioconductor.org/packages/CGHbase") + (home-page "https://bioconductor.org/packages/CGHbase") (synopsis "Base functions and classes for arrayCGH data analysis") (description "This package contains functions and classes that are needed by the @code{arrayCGH} packages.") @@ -1638,7 +1638,7 @@ the @code{arrayCGH} packages.") ("r-impute" ,r-impute) ("r-dnacopy" ,r-dnacopy) ("r-snowfall" ,r-snowfall))) - (home-page "http://bioconductor.org/packages/CGHcall") + (home-page "https://bioconductor.org/packages/CGHcall") (synopsis "Base functions and classes for arrayCGH data analysis") (description "This package contains functions and classes that are needed by @code{arrayCGH} packages.") @@ -1667,7 +1667,7 @@ the @code{arrayCGH} packages.") ("r-matrixstats" ,r-matrixstats) ("r-r-utils" ,r-r-utils) ("r-rsamtools" ,r-rsamtools))) - (home-page "http://bioconductor.org/packages/QDNAseq") + (home-page "https://bioconductor.org/packages/QDNAseq") (synopsis "Quantitative DNA sequencing for chromosomal aberrations") (description "The genome is divided into non-overlapping fixed-sized bins, number of sequence reads in each counted, adjusted with a simultaneous diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4a84273dd2..edfccacb4e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10161,7 +10161,7 @@ the earlier snpMatrix package, allowing for uncertainty in genotypes.") (method url-fetch) ;; We cannot use bioconductor-uri here because this tarball is ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "http://www.bioconductor.org/packages/" + (uri (string-append "https://www.bioconductor.org/packages/" "release/data/annotation/src/contrib/" "Homo.sapiens_" version ".tar.gz")) diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index 4095926af3..982def62c6 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -183,7 +183,7 @@ model.") `(("r-graph" ,r-graph))) (native-inputs `(("pkg-config" ,pkg-config))) - (home-page "http://bioconductor.org/packages/Rgraphviz") + (home-page "https://bioconductor.org/packages/Rgraphviz") (synopsis "Plotting capabilities for R graph objects") (description "This package interfaces R with the graphviz library for plotting R graph |