diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 137 |
1 files changed, 75 insertions, 62 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 64c331d28c..6e915aa437 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -960,14 +960,14 @@ solution for sending email, including attachments, from within R.") (define-public r-stringi (package (name "r-stringi") - (version "1.2.3") + (version "1.2.4") (source (origin (method url-fetch) (uri (cran-uri "stringi" version)) (sha256 (base32 - "1sgg4krw03qkz1n4dwiya0djggk7giwd0w21qlp0pfjqi0rxq6qx")))) + "1y46xab7g1lsjmilp4hbl7pjad6pcxp66hdj8wnfdg9518h0lmq1")))) (build-system r-build-system) (inputs `(("icu4c" ,icu4c))) (native-inputs `(("pkg-config" ,pkg-config))) @@ -1033,19 +1033,17 @@ using just two functions: melt and dcast (or acast).") (define-public r-scales (package (name "r-scales") - (version "0.5.0") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "scales" version)) (sha256 - (base32 "0zg9wfzmsdjxpbld0nzv7hcpq5r0wazqxmn7grvvif2agj0w1z6v")))) + (base32 "0353dkh3d7x78463c6ds80hcml59lrqwr8rlv82a8dnkxla4l7qc")))) (build-system r-build-system) (propagated-inputs - `(("r-dichromat" ,r-dichromat) - ("r-labeling" ,r-labeling) + `(("r-labeling" ,r-labeling) ("r-munsell" ,r-munsell) - ("r-plyr" ,r-plyr) ("r-rcolorbrewer" ,r-rcolorbrewer) ("r-rcpp" ,r-rcpp) ("r-r6" ,r-r6) @@ -1251,13 +1249,13 @@ for template use among CRAN packages.") (define-public r-evaluate (package (name "r-evaluate") - (version "0.10.1") + (version "0.11") (source (origin (method url-fetch) (uri (cran-uri "evaluate" version)) (sha256 (base32 - "070vvmnbdlp7sz2zhza7fhd2a6mlwiln8fn4hyzhsiizbn4n79y9")))) + "1k8vcd4vsgg0hf7kdz8rlqp1dx4ygvg35aj4n3ay50kdnpzhaj5h")))) (build-system r-build-system) (propagated-inputs `(("r-stringr" ,r-stringr))) @@ -1356,13 +1354,13 @@ syntax that can be converted to XHTML or other formats.") (define-public r-yaml (package (name "r-yaml") - (version "2.1.19") + (version "2.2.0") (source (origin (method url-fetch) (uri (cran-uri "yaml" version)) (sha256 (base32 - "04bzrnfgbpk0rhkvzwp3k3ip7jpq26bjxz71bx5mwxmcjdb07nz5")))) + "0in562nd0i23cg91a8kdbqgim656fgscykwi0icsnq53xj3srg2m")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/yaml/") (synopsis "Methods to convert R data to YAML and back") @@ -1656,14 +1654,14 @@ database.") (define-public r-dbplyr (package (name "r-dbplyr") - (version "1.2.1") + (version "1.2.2") (source (origin (method url-fetch) (uri (cran-uri "dbplyr" version)) (sha256 (base32 - "1nwrls9c3kc9q7405jp6b9sh23642sz13yw55iikgw134shffj5k")))) + "0j5w6a1qim972kv4vmvinp3j50yr4idmm9cd3w7y3zsz0nq0nhcx")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -1789,17 +1787,17 @@ and fast file reading.") (define-public r-xtable (package (name "r-xtable") - (version "1.8-2") + (version "1.8-3") (source (origin (method url-fetch) (uri (cran-uri "xtable" version)) (sha256 (base32 - "0398qkpvlw3dv0myz4mjcyqwpwc2m31l127r8vdzwc71wb6s28qn")))) + "09f311gq9g7dzf8jdvcx72j11xb7p00jlg066jjbpa6pz3zv1cjk")))) (build-system r-build-system) (native-inputs - `(("r-knitr" ,r-knitr))) + `(("r-knitr" ,r-knitr))) ; for vignettes (home-page "http://xtable.r-forge.r-project.org/") (synopsis "Export R tables to LaTeX or HTML") (description @@ -1936,14 +1934,14 @@ chain.") (define-public r-ade4 (package (name "r-ade4") - (version "1.7-11") + (version "1.7-13") (source (origin (method url-fetch) (uri (cran-uri "ade4" version)) (sha256 (base32 - "0wm54wcpn87rdh6vyw04cr8vgba899y6jsl61f22bmlvx6d7kkac")))) + "16z9jk4qj35ghsk4lwmq241dgc770y8a70dlmp9q4gz6d8ssgl7m")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass))) @@ -2237,24 +2235,28 @@ tables, autolinks and strikethrough text.") (define-public r-roxygen2 (package (name "r-roxygen2") - (version "6.0.1") + (version "6.1.0") (source (origin (method url-fetch) (uri (cran-uri "roxygen2" version)) (sha256 (base32 - "0xpzziminf225kjwhyl51kgkzhplyzhk5farhf5s822krl2xqbfj")))) + "0ji9k4s1bvfbl8wimfqj1lqr33h1claaz30vb5pgksxyg77j5xaa")))) (build-system r-build-system) (propagated-inputs `(("r-brew" ,r-brew) ("r-commonmark" ,r-commonmark) ("r-desc" ,r-desc) ("r-digest" ,r-digest) + ("r-pkgload" ,r-pkgload) + ("r-purrr" ,r-purrr) ("r-r6" ,r-r6) ("r-rcpp" ,r-rcpp) ("r-stringi" ,r-stringi) ("r-stringr" ,r-stringr) ("r-xml2" ,r-xml2))) + (native-inputs + `(("r-knitr" ,r-knitr))) ; for vignettes (home-page "https://github.com/klutometis/roxygen") (synopsis "In-source documentation system for R") (description @@ -2320,13 +2322,13 @@ functions make it easy to control additional request components.") (define-public r-git2r (package (name "r-git2r") - (version "0.21.0") + (version "0.23.0") (source (origin (method url-fetch) (uri (cran-uri "git2r" version)) (sha256 (base32 - "11xgddmxzh9cy85k8fb90il43qswpvryz0h9r0j1gbclfg2f9004")))) + "01250jz255fnyy2ap90nskvzhd8nhlmbhwgpvb43mk1fax077lrz")))) (build-system r-build-system) ;; This R package contains modified sources of libgit2. This modified ;; version of libgit2 is built as the package is built. Hence libgit2 is @@ -2335,6 +2337,8 @@ functions make it easy to control additional request components.") `(("libssh2" ,libssh2) ("openssl" ,openssl) ("zlib" ,zlib))) + (native-inputs + `(("pkg-config" ,pkg-config))) (home-page "https://github.com/ropensci/git2r") (synopsis "Access Git repositories with R") (description @@ -2514,13 +2518,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.8.500.0") + (version "0.9.100.5.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "1sh36dx6inmb56m40nigy94gxlgjva816qnlmjwg7y2bdvqj8vsi")))) + "1iyjqhfjip1nxrkllzh7r1m01jjnx7cahqkf3s557w34p987f2l1")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (native-inputs @@ -2629,11 +2633,7 @@ certain criterion, e.g., it contains a certain regular file.") ("r-stringr" ,r-stringr) ("r-tinytex" ,r-tinytex) ("r-yaml" ,r-yaml) - ;; rmarkdown works with the 2.x release of Pandoc, but with degraded - ;; functionality. For example, tabbed plots do not currently work with - ;; Pandoc 2. The authors of rmarkdown recommend the use of Pandoc 1 - ;; for the time being. - ("ghc-pandoc" ,ghc-pandoc-1))) + ("ghc-pandoc" ,ghc-pandoc))) (home-page "http://rmarkdown.rstudio.com") (synopsis "Convert R Markdown documents into a variety of formats") (description @@ -2799,13 +2799,13 @@ ldap, and also supports cookies, redirects, authentication, etc.") (define-public r-xml (package (name "r-xml") - (version "3.98-1.11") + (version "3.98-1.16") (source (origin (method url-fetch) (uri (cran-uri "XML" version)) (sha256 (base32 - "18izvlg2x9mzr6yb3yf02ghwbyn00frki3av4lpc44r22m4djnsh")))) + "0nl1kk354r8snhj6p9mc74m7awvqc6akmd4y3a46y78yv3g15njp")))) (properties `((upstream-name . "XML"))) (build-system r-build-system) @@ -3281,14 +3281,14 @@ Stochastic Neighbor Embedding using a Barnes-Hut implementation.") (define-public r-e1071 (package (name "r-e1071") - (version "1.6-8") + (version "1.7-0") (source (origin (method url-fetch) (uri (cran-uri "e1071" version)) (sha256 (base32 - "08n6i26nfckjpxjkzi8phhanc3ahsrirkv5rz38y2jcv7ds031pn")))) + "0fk4pw67cw1663d0n9rf1qfdqzz8k5nqkjgp3hi5jr422qp9lsck")))) (build-system r-build-system) (propagated-inputs `(("r-class" ,r-class))) @@ -3459,13 +3459,13 @@ maintenance for package developers.") (define-public r-r-utils (package (name "r-r-utils") - (version "2.6.0") + (version "2.7.0") (source (origin (method url-fetch) (uri (cran-uri "R.utils" version)) (sha256 (base32 - "03j7hrs03kyj9qrjxyp5kqv4lpqqpk6xwbkzx6j15d8928yrjr2x")))) + "0cxhn14a57x4gcyrwpfz1d6dw4xh0jcpqkb33hx8imnr340blh7n")))) (properties `((upstream-name . "R.utils"))) (build-system r-build-system) (propagated-inputs @@ -3507,13 +3507,13 @@ persistent (on the file system).") (define-public r-r-rsp (package (name "r-r-rsp") - (version "0.42.0") + (version "0.43.0") (source (origin (method url-fetch) (uri (cran-uri "R.rsp" version)) (sha256 (base32 - "1zcq0hzi0j7fvj2rs796a1i120wbr0387vck17rrd644awwbsbm0")))) + "0ax6781kfylx0acz0i3sqnpkxmrq73x29wwfic59ng7vj0ws0gyd")))) (properties `((upstream-name . "R.rsp"))) (build-system r-build-system) (propagated-inputs @@ -3558,13 +3558,13 @@ t-probabilities, quantiles, random deviates and densities.") (define-public r-matrixstats (package (name "r-matrixstats") - (version "0.53.1") + (version "0.54.0") (source (origin (method url-fetch) (uri (cran-uri "matrixStats" version)) (sha256 (base32 - "0bkiz5fm09d3512mfr2ymj9qsb1b8aic5l5m6fkaf5j7nsgvqw6z")))) + "0vx00ldsg2zvdrjn49jxczk2c9iaabgvzgpdka5j02ihh7hv83cg")))) (properties `((upstream-name . "matrixStats"))) (build-system r-build-system) (native-inputs @@ -3739,13 +3739,13 @@ features present in other programming languages.") (define-public r-plotly (package (name "r-plotly") - (version "4.7.1") + (version "4.8.0") (source (origin (method url-fetch) (uri (cran-uri "plotly" version)) (sha256 (base32 - "0wj9lw7w28z8w9ip9vadv6sydjhqyg65kfiai9m3bndzz50b1m3w")))) + "19p8pa03q9mw5vaan7r56xgd13d90ssiz0flbrkvpfrir2105ybq")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -3761,8 +3761,10 @@ features present in other programming languages.") ("r-jsonlite" ,r-jsonlite) ("r-lazyeval" ,r-lazyeval) ("r-magrittr" ,r-magrittr) + ("r-promises" ,r-promises) ("r-purrr" ,r-purrr) ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rlang" ,r-rlang) ("r-scales" ,r-scales) ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr) @@ -3844,14 +3846,14 @@ character vector.") (define-public r-googlesheets (package (name "r-googlesheets") - (version "0.2.2") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "googlesheets" version)) (sha256 (base32 - "18q0xmxn09b52rmky7gr5flp0awndcnsgb7zcvkzvkrkvmwad52b")))) + "11q07nxys72wkxx9mawmjyf20gvwvrb7h3gpa73h6lgh2vgrwnv8")))) (build-system r-build-system) (propagated-inputs `(("r-cellranger" ,r-cellranger) @@ -3861,6 +3863,7 @@ character vector.") ("r-purrr" ,r-purrr) ("r-readr" ,r-readr) ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr) ("r-xml2" ,r-xml2))) (home-page "https://github.com/jennybc/googlesheets") @@ -4088,14 +4091,14 @@ Zurich, including many that are related to graphics.") (define-public r-gtools (package (name "r-gtools") - (version "3.5.0") + (version "3.8.1") (source (origin (method url-fetch) (uri (cran-uri "gtools" version)) (sha256 (base32 - "1xknwk9xlsj027pg0nwiizigcrsc84hdrig0jn0cgcyxj8dabdl6")))) + "0f5syk1qq6cjq6hwymvkiyhzwa389z94722v881ipbfqkd2q8505")))) (build-system r-build-system) (arguments `(#:phases @@ -4228,13 +4231,13 @@ mechanism.") (define-public r-zoo (package (name "r-zoo") - (version "1.8-2") + (version "1.8-3") (source (origin (method url-fetch) (uri (cran-uri "zoo" version)) (sha256 (base32 - "1lpwigxmi5sc23xrha4gcsccsm4yfsg0sa97y6vac3pg1lliblvx")))) + "15jmkgwvq2mm9f09vijgx7sff8pszh90fndcwhk2vw9i0p183di0")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -4248,14 +4251,22 @@ series of numeric vectors/matrices and factors.") (define-public r-ztable (package (name "r-ztable") - (version "0.1.8") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "ztable" version)) (sha256 (base32 - "1hk5k9614n52dpfrhdws06w4gvwhnz8q47x4cwxx88qmrzm8z2m3")))) + "0g7khk5ifsdh9p31wlwh2l5mn1hzxzpv6qcn1wh34vsfjdmijjwy")))) (build-system r-build-system) + (propagated-inputs + `(("r-flextable" ,r-flextable) + ("r-magrittr" ,r-magrittr) + ("r-moonbook" ,r-moonbook) + ("r-officer" ,r-officer) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-scales" ,r-scales) + ("r-stringr" ,r-stringr))) (home-page "https://cran.r-project.org/web/packages/ztable") (synopsis "Zebra-striped tables in LaTeX and HTML formats for R") (description @@ -4350,19 +4361,20 @@ data at that region, and avoids over-plotting.") (define-public r-ggthemes (package (name "r-ggthemes") - (version "3.5.0") + (version "4.0.1") (source (origin (method url-fetch) (uri (cran-uri "ggthemes" version)) (sha256 (base32 - "0drbzzb4i5jq1579fx1wmgh87ybnswjn7srak2l8g771ip49xwb8")))) + "0y6570wv135sf7pv57l7bqilzw47rziaqx4vsk45pf1w4lmj0w8b")))) (build-system r-build-system) (propagated-inputs - `(("r-assertthat" ,r-assertthat) - ("r-colorspace" ,r-colorspace) - ("r-ggplot2" ,r-ggplot2) - ("r-scales" ,r-scales))) + `(("r-ggplot2" ,r-ggplot2) + ("r-purrr" ,r-purrr) + ("r-scales" ,r-scales) + ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble))) (home-page "https://cran.rstudio.com/web/packages/ggthemes") (synopsis "Extra themes, scales and geoms for @code{ggplot2}") (description "This package provides extra themes and scales for @@ -4401,13 +4413,13 @@ dispersion modeling and Tweedie power-law families.") (define-public r-rann (package (name "r-rann") - (version "2.5.1") + (version "2.6") (source (origin (method url-fetch) (uri (cran-uri "RANN" version)) (sha256 (base32 - "0il5i99vbcagnxvb15af5n37g04a4q1x96bz73zh3jhki9fpw9vm")))) + "1r6rivh9ba4gwnzryip0aiwsbm46zma7nvd9z5y456p2dgzp9lii")))) (properties `((upstream-name . "RANN"))) (build-system r-build-system) @@ -4723,14 +4735,14 @@ can be efficiently implemented directly in the R language.") (define-public r-robustbase (package (name "r-robustbase") - (version "0.93-0") + (version "0.93-2") (source (origin (method url-fetch) (uri (cran-uri "robustbase" version)) (sha256 (base32 - "130pzibn5cb8mycv8byc6npzcpddghz8m7jqwk15qmx4g3cj8zgy")))) + "1632p73iv9iqqm0v3k9rfv9way0him3fl35si1nly9wi5kpq5ci7")))) (build-system r-build-system) (inputs `(("gfortran" ,gfortran))) @@ -4999,18 +5011,19 @@ decompositions of such matrices, and solutions of linear systems.") (define-public r-modelmetrics (package (name "r-modelmetrics") - (version "1.1.0") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "ModelMetrics" version)) (sha256 (base32 - "119xxmzb5biq7k1yxqsf0jmmarmfn6lds9x9hfgv593xlpym6za8")))) + "1sgdyrf6fbsn18gk8slir4a1yhv133kfhyg2crfs759nff4aw89h")))) (properties `((upstream-name . "ModelMetrics"))) (build-system r-build-system) (propagated-inputs - `(("r-rcpp" ,r-rcpp))) + `(("r-rcpp" ,r-rcpp) + ("r-data-table" ,r-data-table))) (home-page "https://cran.r-project.org/web/packages/ModelMetrics") (synopsis "Rapid calculation of model metrics") (description |