diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 87 |
1 files changed, 51 insertions, 36 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 38d75941d6..fe8c731a1a 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -183,7 +183,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") (define r-with-tests (package (name "r-with-tests") - (version "3.6.3") + (version "4.0.0") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -191,7 +191,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.") version ".tar.gz")) (sha256 (base32 - "13xaxwfbzj0bd6rn2n27z0n04lb93mcyq991w4vdbbg8v282jc49")))) + "0h1995smlyiyhx7gpg9paxsfqrcn6g9bbp5h9r47i6an3clv1gh6")))) (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-for-tests) @@ -269,6 +269,11 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\ (("my \\$date = strftime \"%B %Y\", localtime" line) (string-append line " 1")))) #t)) + (add-before 'build 'set-locales + (lambda _ + (setlocale LC_ALL "C") + (setenv "LC_ALL" "C") + #t)) (add-before 'configure 'set-default-pager ;; Set default pager to "cat", because otherwise it is "false", ;; making "help()" print nothing at all. @@ -322,7 +327,9 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\ ("perl" ,perl) ("pkg-config" ,pkg-config) ("texinfo" ,texinfo) ; for building HTML manuals - ("texlive" ,(texlive-union (list texlive-fonts-ec + ("texlive" ,(texlive-union (list texlive-ae + texlive-inconsolata + texlive-fonts-ec texlive-amsfonts texlive-latex-base texlive-latex-fancyvrb @@ -331,7 +338,8 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\ texlive-latex-oberdiek texlive-latex-tools texlive-latex-upquote - texlive-latex-url))) + texlive-latex-url + texlive-latex-xkeyval))) ("tzdata" ,tzdata-for-tests) ("xz" ,xz))) (inputs @@ -347,7 +355,7 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\ ("libpng" ,libpng) ("libtiff" ,libtiff) ("libxt" ,libxt) - ("pcre" ,pcre) + ("pcre2" ,pcre2) ("readline" ,readline) ;; This avoids a reference to the ungraftable static bash. R uses the ;; detected shell for the "system" procedure. @@ -399,14 +407,14 @@ available, greatly increasing its breadth and scope.") (define-public r-boot (package (name "r-boot") - (version "1.3-24") + (version "1.3-25") (source (origin (method url-fetch) (uri (cran-uri "boot" version)) (sha256 (base32 - "0yv0l55kjmlfdx1xhgyjdi0bskxhfal74wr5jxaib1qj99nmkm49")))) + "1gpvi1h3nqhnnsfy96rlhakdpj84iqqsxr29rr3261sknky3aj26")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/boot") (synopsis "Bootstrap functions for R") @@ -420,14 +428,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.") (define-public r-mass (package (name "r-mass") - (version "7.3-51.5") + (version "7.3-51.6") (source (origin (method url-fetch) (uri (cran-uri "MASS" version)) (sha256 (base32 - "1k0m7pa4gb5apzrrkb5kx5d7bmkm2pl5g15vwb6j067hrqahck26")))) + "1viyxy22qp8abzzzlbck55b0i81rrdygim1dq2pm52s2v13mq0z2")))) (properties `((upstream-name . "MASS"))) (build-system r-build-system) (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") @@ -441,14 +449,14 @@ Applied Statistics with S\" (4th edition, 2002) by Venables and Ripley.") (define-public r-class (package (name "r-class") - (version "7.3-16") + (version "7.3-17") (source (origin (method url-fetch) (uri (cran-uri "class" version)) (sha256 (base32 - "1jpdgj0lsi60q0mqbhfw809w8d66whix27y6wpdzll6775g3j3ll")))) + "04qk8qia0qr8893fizmkbd5hsqn6m8383c0cyn9xnmkmvyv8a7xy")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass))) @@ -504,14 +512,14 @@ code for possible problems.") (define-public r-foreign (package (name "r-foreign") - (version "0.8-76") + (version "0.8-79") (source (origin (method url-fetch) (uri (cran-uri "foreign" version)) (sha256 (base32 - "1z6x2x1z12wnv0z4p74d91r5wfaq30sdz4ynwx0lncz1q45mhbh5")))) + "1d5rk4k3khjrir1b4ciridd6vdpcgzi35r7p7ra4ky7vbaabcdmg")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/foreign") (synopsis "Read data stored by other statistics software") @@ -524,14 +532,14 @@ for reading and writing some dBase files.") (define-public r-kernsmooth (package (name "r-kernsmooth") - (version "2.23-16") + (version "2.23-17") (source (origin (method url-fetch) (uri (cran-uri "KernSmooth" version)) (sha256 (base32 - "1acrkbdn3a74y4dndkcdl1njnpfqz7gk3bsz03g8lfj8l7z53hmq")))) + "11g6b0q67vasxag6v9m4px33qqxpmnx47c73yv1dninv2pz76g9b")))) (properties `((upstream-name . "KernSmooth"))) (build-system r-build-system) (native-inputs @@ -635,14 +643,14 @@ distributions beyond the exponential family.") (define-public r-nnet (package (name "r-nnet") - (version "7.3-13") + (version "7.3-14") (source (origin (method url-fetch) (uri (cran-uri "nnet" version)) (sha256 (base32 - "1z0rj5cm4ycw1y0gd5wwwg8c2298v90iybgqdqh17967jbi2125f")))) + "1bzl62p5awva5kxcncs6lrdrkqp9ljd993zia731ckfpcjbrw6sx")))) (build-system r-build-system) (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") (synopsis "Feed-forward neural networks and multinomial log-linear models") @@ -673,14 +681,14 @@ classification, regression and survival trees.") (define-public r-spatial (package (name "r-spatial") - (version "7.3-11") + (version "7.3-12") (source (origin (method url-fetch) (uri (cran-uri "spatial" version)) (sha256 (base32 - "04aw8j533sn63ybyrf4hyhrqm4058vfcb7yhjy07kq92mk94hi32")))) + "0qrdhzd5r78iwi46nk8jr56dzz5l5imkflxjw64d0ys0wyg06fbn")))) (build-system r-build-system) (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") (synopsis "Functions for kriging and point pattern analysis") @@ -1624,14 +1632,14 @@ like tidy evaluation.") (define-public r-tibble (package (name "r-tibble") - (version "3.0.0") + (version "3.0.1") (source (origin (method url-fetch) (uri (cran-uri "tibble" version)) (sha256 (base32 - "0s84h8ls5qwixbs1n5safr3xqmg3p0llzdrd9sp4vs2572mwzqzi")))) + "17m7xvn423snq9dmr0bhx42j5rbc53w1viizxx4bvq37nz7m4i8m")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -1694,25 +1702,28 @@ database.") (define-public r-dbplyr (package (name "r-dbplyr") - (version "1.4.2") + (version "1.4.3") (source (origin (method url-fetch) (uri (cran-uri "dbplyr" version)) (sha256 (base32 - "1q2dflr88s5a1amzfld3087q422vf70052qn84zyd8895kdg10xp")))) + "1si8sahr1kwq1xgjzi9klkahad07pyrsngy75y1f74f64907pb39")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) ("r-dbi" ,r-dbi) ("r-dplyr" ,r-dplyr) ("r-glue" ,r-glue) + ("r-lifecycle" ,r-lifecycle) ("r-purrr" ,r-purrr) ("r-r6" ,r-r6) ("r-rlang" ,r-rlang) ("r-tibble" ,r-tibble) ("r-tidyselect" ,r-tidyselect))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/tidyverse/dbplyr") (synopsis "Dplyr back end for databases") (description @@ -1989,14 +2000,14 @@ and environmental data in the framework of Euclidean exploratory methods.") (define-public r-xml2 (package (name "r-xml2") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "xml2" version)) (sha256 (base32 - "0r7rxp922785dcryghbb3wxqgdav7mafwnmxjqfx8zaj3v1q2j3z")))) + "1kx400v62xkd5xal7rzz7jcarz94ac8g1sh4i2dqr78qwgkzj8nz")))) (build-system r-build-system) (inputs `(("libxml2" ,libxml2) @@ -2446,14 +2457,16 @@ tools to simplify the devolpment of R packages.") (define-public r-withr (package (name "r-withr") - (version "2.1.2") + (version "2.2.0") (source (origin (method url-fetch) (uri (cran-uri "withr" version)) (sha256 (base32 - "11j6zykklxnvp4xqsr6a2xib665i38m3khdspp887nwagmvnydj1")))) + "10mmfffjbnb2zq5x0kqhhb4z6va4micc6pjzvlfji34gyhffa8ac")))) (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/jimhester/withr") (synopsis "Run code with temporarily modified global state") (description @@ -2514,13 +2527,13 @@ disk (or a connection).") (define-public r-plotrix (package (name "r-plotrix") - (version "3.7-7") + (version "3.7-8") (source (origin (method url-fetch) (uri (cran-uri "plotrix" version)) (sha256 (base32 - "1x92mmyfry127zzr6cmcj6kjsc4zhxrrdlr0jcxn3bb0hpdfps54")))) + "104llmr6dvlcnfpmd8zbdlv63k79djc4qqgadjavj4v4cmz1zkcc")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/plotrix") (synopsis "Various plotting functions") @@ -2575,13 +2588,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.9.860.2.0") + (version "0.9.870.2.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "1rg9ak0zbv8d9cyj10jq52nrcbk1pvfz28kbkhpx79mpjhrl7pb5")))) + "1r7iajxvbyvslsy16rqacc95azmjciw9lvcq31xl97fl09kmsq5v")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -3743,18 +3756,20 @@ It uses and relies on grid graphics and formal (S4) classes and methods.") (define-public r-purrr (package (name "r-purrr") - (version "0.3.3") + (version "0.3.4") (source (origin (method url-fetch) (uri (cran-uri "purrr" version)) (sha256 (base32 - "17lyys7dxjrwsfkq7a7hw65iy3qn3pp1sn70srdy64jf8adahc8g")))) + "1cj091rsjdj2xz16qhynyw72gh5cyhznifcfbrbygndfr4xwksr3")))) (build-system r-build-system) (propagated-inputs `(("r-magrittr" ,r-magrittr) ("r-rlang" ,r-rlang))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/hadley/purrr") (synopsis "Functional programming tools") (description @@ -4942,16 +4957,16 @@ groupings.") (define-public r-vgam (package (name "r-vgam") - (version "1.1-2") + (version "1.1-3") (source (origin (method url-fetch) (uri (cran-uri "VGAM" version)) (sha256 - (base32 "0kyan3a4ys2xbg9kf167cyf1gk7g963id62cjm2ij4i7y4wi61zq")))) + (base32 "1hwlrdx3nhdp83pvy1h23i16vbbhi4kizdhr58c8nvg7kqdzb7qc")))) (properties `((upstream-name . "VGAM"))) (build-system r-build-system) - (inputs + (native-inputs `(("gfortran" ,gfortran))) (home-page "https://www.stat.auckland.ac.nz/~yee/VGAM") (synopsis "Vector generalized linear and additive models") |